Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02846 ATGGGGCTTGAGAGGGGTACTATATTAAGAGAAGAACAAGAACAAGAGAAAAGCACAAAGCTTTTGGTCATGGCTGCTTCCAATAGTACTCTCAGGAACACCAACCAATCAAGCTCTCAAATGAAACCAGTCCCACCCCCACCACCCCCACCACCACCACCACCACCACCACCACCACCACCACATCTCTTTCATCATGACCAACACCACACCTTTCATCAGCTACAAAACAACAACAACCAAATTTCTTTTGGAATGATGCAATCTCCTCCACCATCAGCTCTTATTCCTGGAAACTACCAGCTAAACAAGGAGTTTGGTGAATTGGATCCATCCGTTCTCCACTATTTTACTGGAGCACAAGCAAACCCCTCAAGTGTTCAAGACCAAAGACAGAACACAGCAACACCATTGATGAGGCGTTCAACTCTCAACATTTTCCCGTCTCAGCCAATGCATACAGTGCCAACATTAACCAATTCCAAGGGTAAAATGGAGTCAGTTTCTCTGCAAGCCGGTGGATCCAAGGCACCATCCAATCCACCCGTGGAGTTGACCAAGCAAAAAGGCCATGTAGTACCTGTTTCTGCCTTTGAACCACCCAAAGCTCCTCAGCCAGATAACAAAAACAAGGGTTCAACGTCAAGTTCTGAGCACCAAGTTGTTAGAATAGAAGATAAGGCTATCAGGAGGCTTGCTCAGAATAGAGAGGCAGCTAGGAAGAGCAGGTTGAGAAAAAAGGCTTATATTCACCAGCTGGAGTCTAGTAGGGTTAGACTCGGTCATCTGGAACAAGAGGTGCAGCGTCTTAGAGCTCAAGTCATATTCTTGGGTGGAAATGCAGCTTTGGGAGGAGAGCAAGGCGTTTCTGTCCCTACCATGAATAATTGCTGTGATTCAGATGTTATTGCTGCGTTTGATTTGGAATATGCTAAATGGGTAGAGGAACACCAACGCCGAGTTGGGGAGTTAAGAACTGCATTCCATAATCGCATTCCTGATCATGAGCTGAGAATGGTTTTGGACAATTGCTTGACACATTTTGACCAAGTGATGAATCTAAAGAGCTTGGTGATTAAAGCAGACGTGACCTATATTTTTTCTGGTATGTGGACGACGGCAGCGGAAAGATGCTCCATATGGATTGGTGGATTCAGGCCTTCTGAGATCTTTAAGATTGTTTTGACTCAAATTGAGCCTCTGTCTGACCAACAAGTCCTGGCTATATGTGCATTGCAACAAACTACACATGAGGCAGAAGATTCTATCATTCTGGGAGTTGATAATCTCAATCAAGCTATGCGAGAGAATTTATCATCAGGCACTTTAACCCATACTCCCAATATGAATAACTACATGTCACATATGGCCATCGCCATGACCAAGCTCTCCGGTCTTGAAACTGTTGTGAGACAGGCAGACACTCTGAGGCATCAAACAATTCGCCGTCTGCTTCAGATCCTAACAACTCGTCAAGCAGCAAGGTGTTTTATGTCGATTGCTGAGTACTTTCATCGTGCGCGAGCGCTGAGTTCTCTGTGGGTGGCACGCACTCGCCAAGACTAA 1566 0.4547 MGLERGTILREEQEQEKSTKLLVMAASNSTLRNTNQSSSQMKPVPPPPPPPPPPPPPPPPPHLFHHDQHHTFHQLQNNNNQISFGMMQSPPPSALIPGNYQLNKEFGELDPSVLHYFTGAQANPSSVQDQRQNTATPLMRRSTLNIFPSQPMHTVPTLTNSKGKMESVSLQAGGSKAPSNPPVELTKQKGHVVPVSAFEPPKAPQPDNKNKGSTSSSEHQVVRIEDKAIRRLAQNREAARKSRLRKKAYIHQLESSRVRLGHLEQEVQRLRAQVIFLGGNAALGGEQGVSVPTMNNCCDSDVIAAFDLEYAKWVEEHQRRVGELRTAFHNRIPDHELRMVLDNCLTHFDQVMNLKSLVIKADVTYIFSGMWTTAAERCSIWIGGFRPSEIFKIVLTQIEPLSDQQVLAICALQQTTHEAEDSIILGVDNLNQAMRENLSSGTLTHTPNMNNYMSHMAIAMTKLSGLETVVRQADTLRHQTIRRLLQILTTRQAARCFMSIAEYFHRARALSSLWVARTRQD. 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02846 521 MobiDBLite consensus disorder prediction 41 62 - -
Seca1g02846 521 Pfam bZIP transcription factor 225 271 IPR004827 GO:0003700|GO:0006355
Seca1g02846 521 Gene3D - 226 279 - -
Seca1g02846 521 PANTHER TRANSCRIPTION FACTOR TGA9 136 520 - -
Seca1g02846 521 SUPERFAMILY Leucine zipper domain 227 274 IPR046347 GO:0003700|GO:0006355
Seca1g02846 521 FunFam BZIP family transcription factor 226 275 - -
Seca1g02846 521 MobiDBLite consensus disorder prediction 23 40 - -
Seca1g02846 521 Pfam Seed dormancy control 321 395 IPR025422 GO:0006351|GO:0043565
Seca1g02846 521 SMART brlzneu 223 282 IPR004827 GO:0003700|GO:0006355
Seca1g02846 521 SUPERFAMILY Formin homology 2 domain (FH2 domain) 50 56 - -
Seca1g02846 521 MobiDBLite consensus disorder prediction 165 221 - -
Seca1g02846 521 ProSiteProfiles DOG1 domain profile. 303 517 IPR025422 GO:0006351|GO:0043565
Seca1g02846 521 Coils Coil 253 273 - -
Seca1g02846 521 MobiDBLite consensus disorder prediction 23 66 - -
Seca1g02846 521 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 230 245 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02846 Seca-Chr1 79122640 79128845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02846 98 521 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 46.309 1.12e-129 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca1g02846 DOG1 4.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02846 K14431 - gmx:100799713 503.442