Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02841 ATGAGTCCCCAAAACAACTTCCTATCCCTTTTGGTTCCCCTGGCTGCAATCTTTGCATCTCTGTATCTCATAAATCCAAATCCACAGTTCCTCCAAAATTTCACATACTTCACTCTCACAACTTTGTCACCACCATCTATGTACTTGTCACTTCCTTTAACTTACAACCATCATCATAGACCACACAAAAAACACCCTGATAGTGGAAATAATGCTAGTTCTAATATTTGTGATGATTTTCCACCAGGCATTCCACCACCAAACACCAATACCACTTCATATCTTTGTGTTGATCGAAAAGGGTGTTGTAATTTCACAACAGTACAAGCAGCCGTTAATGCAGTTCCAGATTTCAGCTTAAAAAGAACCATAATATGGATTAATAGTGGCATCTACTATGAGAAAATCATGGTGCTTAGAACCAAACCCAACATTACATTTCAAGGACAAGGCTACACTTCAACAGCACTTGCATGGAATGATACTGCAAAGTCAGCGAATGGCACGTTTTATAGTGGCTCTGTTCAAGTTTTTGCCTCTAACTTCATTGCTAAGAACATAAGCTTCATGAATTTAGCACCAATTCCTGTCCCTGGGGCTGAAGGAGCACAAGCAGTAGCCATTAGAATATCAGGGGATCAAGCTGAATTCAGGGGTTGTGGATTCTTTGGAGCACAAGACACCCTTCATGATGATAAGGGTCGTCATTACTTCAAAGATTGCTATATTCAAGGCTCCATTGATTTCATATTTGGCAATGCAAGGTCACTCTATGAGAATTGTCAATTAGTTTCTATAGCAAATCCATTGCCACCGGGGCAAAAGAGCATAAATGGTGCTGTTACAGCTCATGGTAGAGTTTCAGGGGATGAAAATACAGGATTTGCATTTGTGAATAGTACAATAGGAGGCAACGGAAGAATATGGTTGGGTCGAGCATGGAGGCCATATTCCCGTGTTGTTTTTGCCTTCACAGTAATGTCAGATATCATTGCCCCTGAAGGTTGGAATGATTTCAATGACCCAACAAGAGACCAGACTATATTCTATGGAGAGTACAATTGCTCTGGGCCTGGGGCTAATATGGCATTGAGGGCACCTTATGTACAGAGATTAAACGATACACAAGCTTTTCCATTCCTCAATACAAGTTTTATTGATGGAGAGCAATGGTTGGAAACTTAG 1185 0.4068 MSPQNNFLSLLVPLAAIFASLYLINPNPQFLQNFTYFTLTTLSPPSMYLSLPLTYNHHHRPHKKHPDSGNNASSNICDDFPPGIPPPNTNTTSYLCVDRKGCCNFTTVQAAVNAVPDFSLKRTIIWINSGIYYEKIMVLRTKPNITFQGQGYTSTALAWNDTAKSANGTFYSGSVQVFASNFIAKNISFMNLAPIPVPGAEGAQAVAIRISGDQAEFRGCGFFGAQDTLHDDKGRHYFKDCYIQGSIDFIFGNARSLYENCQLVSIANPLPPGQKSINGAVTAHGRVSGDENTGFAFVNSTIGGNGRIWLGRAWRPYSRVVFAFTVMSDIIAPEGWNDFNDPTRDQTIFYGEYNCSGPGANMALRAPYVQRLNDTQAFPFLNTSFIDGEQWLET. 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02841 394 SUPERFAMILY Pectin lyase-like 94 392 IPR011050 -
Seca1g02841 394 Gene3D - 88 394 IPR012334 -
Seca1g02841 394 FunFam Pectinesterase 89 394 - -
Seca1g02841 394 MobiDBLite consensus disorder prediction 59 82 - -
Seca1g02841 394 Pfam Pectinesterase 97 388 IPR000070 GO:0030599|GO:0042545
Seca1g02841 394 ProSitePatterns Pectinesterase signature 2. 243 252 IPR033131 -
Seca1g02841 394 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 83 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02841 Seca-Chr1 78920546 78925104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02841 75 393 Carbohydrate Esterase AT1G05310 73.354 0.0 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02841 - - gmx:100806629 689.493