Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02837 ATGGCAGGAACTGGTTTCTACACTTCCTGTTTAAGTCTTTCCTCCTCCAGCAACTTAGGGAGATGTTGGTTGGTATTAAAAACTCACAATGCAAGGACCGTGCCAGGGAAACTACCTGGAAGGAGAAGATTGACAATAAATGCAGAAGTGAAGTTTGTAAATGGTGAAGAAGCGAAGCAACTTATAGCAGTCGATGGATACACTGTTTTGGATGTGCGAGACAGAATACAGTTTGAGCGAGCTCATATCAAATCATGTAGTCATGTTCCTCTTTTTATTGAAAATCAAGACAATGATCTCGGTACAATCATAAAAAGGACAGTGCACAACAATTTTTCTGGGTTGTTCTTTGGGTTGGCATTCACTAAGCCAAATCCTGATTTTATACAATCTATTAAGAGTCAATTTCCACCTGAAAGTAAACTCTTGGTTGTATGTCAGGAAGGATTGAGGTCTGCTGCAGCAGCAAGTAAGTTAGAGGAAGCTGGATTCATAAATTTAGCATGCATAACATCTGGCCTTCAAACTGTGAAACCAGGGACATTTGATTCTGTTGGCTCCACGGAGTTGCAGAATGCTGGCAAAGCTGGTTTGGTGACAATCCAAGGAAAAATTTCAACTGTGTTGGGAACTGTTCTTATTTGTGCATATTTATTCATTACCTTCTTTCCTGATCAAGCAGAGAAGCTGTTTCAATTGGTCCCTGCAGGCTAA 714 0.4048 MAGTGFYTSCLSLSSSSNLGRCWLVLKTHNARTVPGKLPGRRRLTINAEVKFVNGEEAKQLIAVDGYTVLDVRDRIQFERAHIKSCSHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLAFTKPNPDFIQSIKSQFPPESKLLVVCQEGLRSAAAASKLEEAGFINLACITSGLQTVKPGTFDSVGSTELQNAGKAGLVTIQGKISTVLGTVLICAYLFITFFPDQAEKLFQLVPAG. 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02837 237 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 48 175 IPR036873 -
Seca1g02837 237 Pfam Rhodanese-like domain 56 175 IPR001763 -
Seca1g02837 237 ProSiteProfiles Rhodanese domain profile. 63 186 IPR001763 -
Seca1g02837 237 Gene3D - 51 181 IPR036873 -
Seca1g02837 237 SMART rhod_4 53 183 IPR001763 -
Seca1g02837 237 FunFam Rhodanese-like domain-containing protein 9, chloroplastic 40 182 - -
Seca1g02837 237 PANTHER RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 9, CHLOROPLASTIC 1 236 IPR044615 -
Seca1g02837 237 CDD RHOD 57 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02837 Seca-Chr1 78748556 78751912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02837 12 231 Sulfurtransferasese or Rhodanese AT2G42220 72.273 4.56e-117 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02837 - - gmx:100801860 397.897