Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02835 ATGGTTTGCGACTTCCTCCATGTGCATCTCAACCTCGTTGTCTTCTTGTCAATTTTAATTTCTCAGGGCTTGGCGCTCACTCTTCCATCTGAAGTCTCAGCTCTCCAGGATCTATACAGGGCCTTAAACTTTCCACCAACACTCCAAGGATGGAATGGTAACGATCCTTGTGAGGAGTCTTGGACAGGAGTTGCTTGTTCTGGGTCATCAGTTATACACCTAAAAATTCCAGGATTAAACCTCACTGGGTGTCTTGGAAGCATGCTCTATAATCTACGTAACTTGAAGCAACTTGATGTCAGTTCTAATAACATAGTTGGCGAAATACCATTCGGTTTACCTCCGAATGTCACACATATCTTGACTTCTTGCAACTATTTGGATCAAAATATCCCACACCCTTTGACAGTCATAGAAATTTTGTCTTGCAGGAATTTAAGCCACAATTTCTTAAATGGACCCATTGGTGACGTATTTACTGGCTTAGATGATCTCAAAGAAATGGACCTTTCATACAATAATTTCTCAGGAGATCTACCACGTTCATTTGGTTCCTTAACAAACCTTGCTAGATTGTTCCTGCAGAATAACAGATTCACTGGATCAGTCGTCTACCTGGCAGAACTTCCACTTACAGATTTGAACATTCAAGACAATCTGTTTAGTGGCCTTCTTCCACACCATTTTCAGTCCATACAAAATTTATGGATTGGAGGGAATAAATTCCATGCGGCAGACAACTCTCCTCCCTGGACTTTTCCTTTAGCTACTGTACCAGTTGAGCACAATATTAGTCGCCCACCCACAACTCATGCAACTGCCATCAAGAACTATCCTCCTCCCAAAGTAAGTGAGCACAAGAAGAAACAAATAGGTCCTGGGGGAATAGCTTTTATGGTTGGTGGAGGAACACTAATGGCTACAGGTATGGCACTCTTTGTTGCAATCCGTTTGAGTAAACAGCGTCTACAAAGGCTGCACTTCAATAACATGGAAAGCAACCACAGCTCTTTGCATTCTCATCAGACCAGTGCAACCATAGAAGTCTCTTCTACGGCACTGGATGAGAGCCCACAGATCCCACCTTTTAATGCTACATCTCTTTTGGGTCCAATGCGACTTCCTTCCCTGCTCCATACCAATGTAAAGGAATCATCAAGAAGAAGTTTTTCCAAAAGAGGCAGATCCACTGGAGGGACGAAAATTTACACGGTCGCGGAGCTTGAGTTGGCTACCAACTGCTTCAATGAAAGCAACCTTCTGGGAGAGGGATCTCTTGGTCCTGTTTACAGAGCTGAATTTCCTGATGGCAAAATTTTTGCCGTGAAGAATATAAACATGGCGGGCGTGTCTTACAGAGAAGAGGAGAAGTTCTTGGATTTCATTTGCGCGGCTTCCCGACTGAAGCACCCCAACATCGTAGCACTCAATGGTTACTGTTTGGAGCATGGAAAGCATCTTCTTGTTTACGATTACGTTGGAAATTTAACTCTCAACGATGCTCTTCACAGTGGAGCAAACAAACCTCTATCGTGGGTTCAACGTCTTCGAATCGCTCTAGGTGTTGCTCAGGCTCTAGACTATTTGCACTCAGCATGCTGCCCTCCTGTGGCCCATGGTAACTTGAAGGCTGCCAATGTTCTGCTGGATGAAAAATCGATGCCTCGAGTTTGTGACATTAGCTTGGCTATTTTGAGACCACTGAGGAGCAATCAGGTTAAAATTCCAGCTACTGAGGGCATCATTAGAGAGAGAGGATCCGTTGCGCCTGGCCAGGGCCTAGCAGGATCCAGCAGCAGAAGGGGAGACGTCTTTGCCTTTGGGGTATTGCTTCTGGAACTGTTAACAGGAAGGAAACCTTTCGATGATGCCAGGCCAAGGGAGGAGCAATATCTGGTGAAATGGGCTTCACCCAGGCTTAATGATAGCGCGAGTTTGGAACAGATCGTGGATCCTGGTATGAAAAGGACATTTTCATCCAAGGCTCTTTGTCTTTATGCTGGTATCATCTCCCTCTGTATACAGCCTTTAAGGCAATTCCGTCCACCAATGTCTGAAGTTGTGGACTCTCTTGTATCTTTTTCTCAAAAGTTCAACTATACAAAGAGCGGTGTAGCAGATGGTACTGAATTTGATCTGTTTGAGAGATCGTTCCGTTCAAACAACACATGCTTTATAATTTCACCGGCATTGAGCCATGCATCAGCCTGA 2211 0.445 MVCDFLHVHLNLVVFLSILISQGLALTLPSEVSALQDLYRALNFPPTLQGWNGNDPCEESWTGVACSGSSVIHLKIPGLNLTGCLGSMLYNLRNLKQLDVSSNNIVGEIPFGLPPNVTHILTSCNYLDQNIPHPLTVIEILSCRNLSHNFLNGPIGDVFTGLDDLKEMDLSYNNFSGDLPRSFGSLTNLARLFLQNNRFTGSVVYLAELPLTDLNIQDNLFSGLLPHHFQSIQNLWIGGNKFHAADNSPPWTFPLATVPVEHNISRPPTTHATAIKNYPPPKVSEHKKKQIGPGGIAFMVGGGTLMATGMALFVAIRLSKQRLQRLHFNNMESNHSSLHSHQTSATIEVSSTALDESPQIPPFNATSLLGPMRLPSLLHTNVKESSRRSFSKRGRSTGGTKIYTVAELELATNCFNESNLLGEGSLGPVYRAEFPDGKIFAVKNINMAGVSYREEEKFLDFICAASRLKHPNIVALNGYCLEHGKHLLVYDYVGNLTLNDALHSGANKPLSWVQRLRIALGVAQALDYLHSACCPPVAHGNLKAANVLLDEKSMPRVCDISLAILRPLRSNQVKIPATEGIIRERGSVAPGQGLAGSSSRRGDVFAFGVLLLELLTGRKPFDDARPREEQYLVKWASPRLNDSASLEQIVDPGMKRTFSSKALCLYAGIISLCIQPLRQFRPPMSEVVDSLVSFSQKFNYTKSGVADGTEFDLFERSFRSNNTCFIISPALSHASA. 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02835 736 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 380 492 - -
Seca1g02835 736 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 15 694 IPR046959 -
Seca1g02835 736 Pfam Protein tyrosine and serine/threonine kinase 419 689 IPR001245 GO:0004672|GO:0006468
Seca1g02835 736 SUPERFAMILY Protein kinase-like (PK-like) 390 691 IPR011009 -
Seca1g02835 736 SUPERFAMILY L domain-like 28 244 - -
Seca1g02835 736 FunFam Leucine-rich repeat receptor-like protein kinase 493 702 - -
Seca1g02835 736 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 28 253 - -
Seca1g02835 736 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Seca1g02835 736 Gene3D Transferase(Phosphotransferase) domain 1 494 712 - -
Seca1g02835 736 MobiDBLite consensus disorder prediction 334 356 - -
Seca1g02835 736 Gene3D Phosphorylase Kinase; domain 1 378 492 - -
Seca1g02835 736 Gene3D Ribonuclease Inhibitor 26 262 IPR032675 -
Seca1g02835 736 Pfam Leucine rich repeat 145 199 IPR001611 GO:0005515
Seca1g02835 736 MobiDBLite consensus disorder prediction 266 289 - -
Seca1g02835 736 ProSiteProfiles Protein kinase domain profile. 415 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02835 Seca-Chr1 78695573 78701585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02835 10 736 Strubbelig Receptor Gene Family AT5G06820 52.322 0.0 675
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Seca1g02835 PK_Tyr_Ser-Thr 2.8e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02835 - - gmx:100775254 1016.91