Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02834 ATGGCTTCAGGGGCTGCCACAAAACAACCCTCCTCGCCGCCCAACTCTTCTTCTGAGTCCCTCAATGGCTTGAAATTTGGCCAAAGAATCTATTTTGAGGATGTGGGTCTCTCTACTCCTGCCACCTCTGTTGCTGGGTCTGCTAGTTCTTCTTTATCATCACCATCTTCAACTTCAGCTTCTTCTGGTACAAAGAAGGGAAGAGGTGGGTCTCTTCAACCGGCTCAGCCTCCTAGGTGTCAAGTTGAAGGCTGTAAAGTAGATCTGAGTGATGCCAAAGCTTACTATTCTAGGCACAAAGTCTGTGCCATACACTCCAAATCCCCTACTGTTATTGTAGGGGGTCTTCAACAAAGGTTTTGCCAACAGTGTAGCAGATTTCATCAGCTTTCTGAGTTTGATCAAGGAAAAAGAAGTTGCCGCAGGCGACTAGCTGGCCATAATGAACGTCGGAGAAAGCCCTCGCCCAGCTCCCTCTTAACCTCTCGTTATGCCAGACTTTCTTCATCTATTTTTGATAATAACAACAGAGGTAGCAGCTTTCTGATGGAATTTGCTTCATACCCAAAGCTCAGTTTGAGAAATTCACTTTCAACTGAGCTAGTTCCTGGAAATCAATCCTCAACACATAGCTGGCATTGGCAAGGTAACTCAGAGACACCACCTGACTATTTCTTACAAGGCTCAGTGGGTGGCACAAGCTTCCTTGGTGCCAGACATCCTCCAGATGAAAGTTACACTGGAGTCACAGACTCAAGCTGTGCTCTCTCTCTTCTGTCAAGTCAAACATGGGGTTCTAGAAACACAGCACCACCAAGTCTTGGGTTGAACAACATGCTAAATTTCAATGGGACACCCATGACACAACTTGCTACATCATCTCATGGTGCAGCCATGCATCAACTTCCAAATACCTCGTGTTGTTTCAAGGGCATCGATCCTGGTAACTGTTCACACGAGGTTGTCCCTGATCTTGTTCTGGGTCAAATTTCACAGCCTCTCGATGGCCAACTCCCTGGTGAGTTTGATCTATCCCAACAGGGCAGGAGGCATTATATGGATCTAGAACAGTCCAGGGCCTATGAATCTCCACACTGGTCACTTTAA 1107 0.4661 MASGAATKQPSSPPNSSSESLNGLKFGQRIYFEDVGLSTPATSVAGSASSSLSSPSSTSASSGTKKGRGGSLQPAQPPRCQVEGCKVDLSDAKAYYSRHKVCAIHSKSPTVIVGGLQQRFCQQCSRFHQLSEFDQGKRSCRRRLAGHNERRRKPSPSSLLTSRYARLSSSIFDNNNRGSSFLMEFASYPKLSLRNSLSTELVPGNQSSTHSWHWQGNSETPPDYFLQGSVGGTSFLGARHPPDESYTGVTDSSCALSLLSSQTWGSRNTAPPSLGLNNMLNFNGTPMTQLATSSHGAAMHQLPNTSCCFKGIDPGNCSHEVVPDLVLGQISQPLDGQLPGEFDLSQQGRRHYMDLEQSRAYESPHWSL. 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02834 368 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 25 295 IPR044817 GO:0003677
Seca1g02834 368 MobiDBLite consensus disorder prediction 42 69 - -
Seca1g02834 368 ProSiteProfiles Zinc finger SBP-type profile. 77 154 IPR004333 GO:0003677
Seca1g02834 368 MobiDBLite consensus disorder prediction 1 22 - -
Seca1g02834 368 Gene3D - 70 141 IPR036893 GO:0003677|GO:0005634
Seca1g02834 368 FunFam Squamosa promoter-binding-like protein 14 71 141 - -
Seca1g02834 368 MobiDBLite consensus disorder prediction 42 79 - -
Seca1g02834 368 Pfam SBP domain 80 153 IPR004333 GO:0003677
Seca1g02834 368 SUPERFAMILY SBT domain 78 159 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02834 Seca-Chr1 78690556 78694947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02834 24 368 SBP-box Gene Family AT2G42200 40.415 2.39e-63 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Seca1g02834 SBP 6.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02834 - - gmx:100807165 544.273