Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02830 ATGATCGACTTCCGAAAACTCAGATTAACATTCACATTCTCCAATGTTGCCCAAAACCACCTCAGGCTTAAACCCCAACAAAACCCTAGATTTCATAGCACGAAAAGAGCACTTGAATTGAATCATTTCGAAAAAGAAAAACCTCTTCGGAAATCCATCATGAAAGAAGCCCAAGCTGCATTGCTGGAATATCTGCATTCAACAAGGAGCTTGCAGTTTTTGGACGCAGACAACATGTGCAAAAACTCGCCTTTTTTCCTTCACGACCTTGTGAAGAAAACCCAACAGAACGAAGGAGGCACGGCCACAAAGCGATCCTTTTCACGCTACCTTCGTTACCACCCCATCAACGAGTTCGAACCCTTCTACGAGAGCTTGGGTTTGAAGCCTTCCGAATACGCACCCTTTCTTCCACGTGACATGATTTTCCTCACTGATGACCCTTTGTTGATGGGGAATTATCACACTCTGTGTAACTATGGGGTTCCCCGCAGCAAAATGGGGAACATTTTCAAGCTTGCACCCCAAGTGTTTCGTTACGAACATGGGGTTTTGAGCTCAAAGCTTAAGGCTTATGAAAACCTGGGTGTTGCACCTTCCACTTTAGTGGATGTTATTGCTGTTAGTCCCTACCTTATGGTTGGGGATGTTAACCTTGATTTTGTCAAGGTTGTGGAAAAGTTGAAGCCTTTTGCTGCAAAGGGTGGTTGTGGTGGTTGGATTGAGGAGCATTTGGTTGGTGGGGGTTCTTGTAATTGGGGCATGATGCTTCAGCTCTTGTGCTTGCTTTCCAAGGTTGGTCTCAGTGAGGAACAGTTGGTTGACATCATTTGCAACCACCCTTGTGTTGTTTTTGAGGAGTCAGGAGGTAGGACACTGTCCCTGATTGCCTTCTTGATCAAATTTGGATTGTCTGTGAATCAGATTGTTCTCATGTTTCTTGAGTTTCCGCAGATTCAGATTGGCAAGTTTTTCGCCAACTTGAGGCAGTGTTTGCTGTTCCTGAGTGAAATTGATATGCAGGCTGCAGTGATTGGAAGGATTTTCCAATCTCACTCCTTGCTGCTGGGTTCCTTCACTCTGAAGAAAGCAAATAGTTTGCTTCTTAGCTTAAAAGGTGGCAAGAAGCGAGTCTGTAGAATCGTGCAGGATAATCCTCAAGTATTGAAGAATTGGGCTCTGGGGAGAAAAGTCCAGCCTTTGGAGAACTTAAATGAAGAGGAGAAATCAAAGGAACTGAAGACAAAGTTCATACTGAGCTTGGGATATGTGGAAAACTCAGAAAAAATGAAATGGGCATTTAAGGTGTTCAGAGGTAAAGGAGCTGAGCTTCAGGAGAGATTTGATTTTATTGTTAAAGCTGGCTTGGATTATAAGGATGTTCGTAAAATGATTAATGTTTCCCCTCAGATTCTTAACCAGACCACAAATAGGATCAACATGAAAATTGAGTATCTTTTAAATGAAGGATATCCTATAACAGATTTAGTGAGTTTCCCATCTTTTCTTTCCTATACACCTCAAAGAGTTAAGCTTAGATTATCAATGTATAACTGGCTCAAAGACCATGGTGCTGCAGATCCTGGCCTTGCTTTGAGCACTACAATTGCATGCTCAGAGAAAATATTTATACAGCAGTATGTAAAACGTCATCCATCTGGCATTCAAGTTTGGCAGAATTTAAAGAAAGAAATTTGTTCTGAGGATTAA 1710 0.4211 MIDFRKLRLTFTFSNVAQNHLRLKPQQNPRFHSTKRALELNHFEKEKPLRKSIMKEAQAALLEYLHSTRSLQFLDADNMCKNSPFFLHDLVKKTQQNEGGTATKRSFSRYLRYHPINEFEPFYESLGLKPSEYAPFLPRDMIFLTDDPLLMGNYHTLCNYGVPRSKMGNIFKLAPQVFRYEHGVLSSKLKAYENLGVAPSTLVDVIAVSPYLMVGDVNLDFVKVVEKLKPFAAKGGCGGWIEEHLVGGGSCNWGMMLQLLCLLSKVGLSEEQLVDIICNHPCVVFEESGGRTLSLIAFLIKFGLSVNQIVLMFLEFPQIQIGKFFANLRQCLLFLSEIDMQAAVIGRIFQSHSLLLGSFTLKKANSLLLSLKGGKKRVCRIVQDNPQVLKNWALGRKVQPLENLNEEEKSKELKTKFILSLGYVENSEKMKWAFKVFRGKGAELQERFDFIVKAGLDYKDVRKMINVSPQILNQTTNRINMKIEYLLNEGYPITDLVSFPSFLSYTPQRVKLRLSMYNWLKDHGAADPGLALSTTIACSEKIFIQQYVKRHPSGIQVWQNLKKEICSED. 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02830 569 Gene3D Transcription termination factor 3, mitochondrial 291 563 IPR038538 -
Seca1g02830 569 Pfam mTERF 443 543 IPR003690 GO:0003690|GO:0006355
Seca1g02830 569 Pfam mTERF 261 411 IPR003690 GO:0003690|GO:0006355
Seca1g02830 569 Gene3D Transcription termination factor 3, mitochondrial 82 288 IPR038538 -
Seca1g02830 569 SMART mt_12 493 526 IPR003690 GO:0003690|GO:0006355
Seca1g02830 569 SMART mt_12 274 305 IPR003690 GO:0003690|GO:0006355
Seca1g02830 569 SMART mt_12 168 198 IPR003690 GO:0003690|GO:0006355
Seca1g02830 569 SMART mt_12 462 492 IPR003690 GO:0003690|GO:0006355
Seca1g02830 569 PANTHER CGI-12 PROTEIN-RELATED 258 551 IPR003690 GO:0003690|GO:0006355
Seca1g02830 569 FunFam Transcription termination factor MTEF18, mitochondrial 295 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02830 Seca-Chr1 78651272 78652981 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca1g02830 mTERF 3.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02830 - - lja:Lj1g3v4317450.1 774.237