Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02829 ATGGAATCAACTCAGCATGCATTGAGAGCACCTAGCAAGTTGATTGATGGAAGATTGGCTGTCTGTAATCTAGCTTGTGAGGGCCTAAGTGGAACAAGTAGTTCTCCTGATCTTGCCCTGAGGAAGCTTTATATTGGAAGCTTATCACCAGAAGTCACAACTGAAATGCTGCTTAGCTTTTTTGGGAGGCATGGTGACATAGAGGAAGGCTCAGTTGCATATGACAAGGATACAAATGAATCACGTGGTTTCGGCTTTGTTACATACAGGACAGCAGAGGCTGCGAAGAAGGCCATAGATGACCCTGAAAAGACTCTTGGGGGGAGGAATATAATTGTAAAATATGCTGATTCCCACAAGGGTAAAACCGGCCAGCCACCATTTCCTGCAGGAGGAGTTCCAGTGGCAGCCTTACCTATGACCCCAGGATATGTTCAGCCTGGAAAAGCTCATATTAATTCCGGTCCCCCGGTTGGTTATGCATACCCCCAAACTGTAGCACCATATCCTGGAGCTCCTTATCCAAGCCCTCCTACTGCACACTCTCCTTATCCAACACAAGGGCAGGTTTCTTATCCTCCAGTTTCTGCCAAGAAAGACCAACTTGGGCTCCCGCCAACTCAACCTGTAGGAATGAACAACTACCCTTATTACTATCCTAAGCAATGA 669 0.4679 MESTQHALRAPSKLIDGRLAVCNLACEGLSGTSSSPDLALRKLYIGSLSPEVTTEMLLSFFGRHGDIEEGSVAYDKDTNESRGFGFVTYRTAEAAKKAIDDPEKTLGGRNIIVKYADSHKGKTGQPPFPAGGVPVAALPMTPGYVQPGKAHINSGPPVGYAYPQTVAPYPGAPYPSPPTAHSPYPTQGQVSYPPVSAKKDQLGLPPTQPVGMNNYPYYYPKQ. 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02829 222 SUPERFAMILY RNA-binding domain, RBD 38 132 IPR035979 GO:0003676
Seca1g02829 222 SMART rrm1_1 42 114 IPR000504 GO:0003723
Seca1g02829 222 CDD RRM2_NsCP33_like 42 116 - -
Seca1g02829 222 FunFam UBP1-associated protein 2C 28 126 - -
Seca1g02829 222 Gene3D - 12 126 IPR012677 -
Seca1g02829 222 MobiDBLite consensus disorder prediction 173 209 - -
Seca1g02829 222 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 220 - -
Seca1g02829 222 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 43 111 IPR000504 GO:0003723
Seca1g02829 222 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 118 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02829 Seca-Chr1 78646240 78650056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02829 33 152 C2H2 Transcription Factor Family AT2G19380 31.496 1.56e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02829 K12741 - gmx:100776344 366.311