Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02828 ATGTTTCAGCATTCTTCCAAGATGTACGGAACTCAATGGGAACCCCACATAGAGATTAGCAACTTAGCCAAGGTTGTTGGAACAGAACACCTGAGTTTTGAGCCCATCAAATCACCCTGCAACATTGTGACAACTCCTCTTCAAACACCACCTGGTTTTTGTGCAAGTGCAGCTAAGAGTCTTGTGAGCTTTGAAGCTCAAGAACATGATCAGCATCAGATTGGTGTTCCTGCTTGGTGCTTTGAGTTTCCAGAGACTACAGACTCCCCTATGTTGATTTGCCAAGCCTCAGGAGATAACTTCACCAAACAAGATCAACATGTTTCTCAATTCACAAGCTCCTTGTACTCAGTTGCTGAATCTTTCTTGTCTAGCAGTGAAGATAGTCATTCTTCTTCTGAAATGAAATATAGTGACTTACAGCCTGATAAATTAGTGAGGGATGATGCTGCCACCAATAAGAGGCCCTTTGAAATTTCCTTTCAGAGAAATCAGTTGGCCTCATGTGCAAAGCAAGAAGAGCAGGCTCCTGGACTTTGTGGGGTTGCCTGTGTCACTTCTAGCAACTCTGCTTCTAGGAGAGCTCTAACAGGTAAAAGAAGAATAAGATGGACCAAGGATCTTCATGAGCCATTTATGATGATTGTTGATAGCCTTGGTGGTCCAGAAAAGGCAAAGCCCAAGGCTATACTAGAGATGATGAAAACGGATTTGCTGTCCATTTCTCATGTTAAAAGTCATTTGCAGAAATGTAGGTCTACAATACAAATGCACAAAGCTTTGCAGGGTAAATTACTTTCTGTCATTGTCATTGTCAGTGTGTCTAACATTACAGCAATGCATACCTCATGA 852 0.4202 MFQHSSKMYGTQWEPHIEISNLAKVVGTEHLSFEPIKSPCNIVTTPLQTPPGFCASAAKSLVSFEAQEHDQHQIGVPAWCFEFPETTDSPMLICQASGDNFTKQDQHVSQFTSSLYSVAESFLSSSEDSHSSSEMKYSDLQPDKLVRDDAATNKRPFEISFQRNQLASCAKQEEQAPGLCGVACVTSSNSASRRALTGKRRIRWTKDLHEPFMMIVDSLGGPEKAKPKAILEMMKTDLLSISHVKSHLQKCRSTIQMHKALQGKLLSVIVIVSVSNITAMHTS. 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02828 283 SUPERFAMILY Homeodomain-like 198 255 IPR009057 -
Seca1g02828 283 NCBIfam myb-like DNA-binding domain, SHAQKYF class 199 253 IPR006447 GO:0003677
Seca1g02828 283 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 162 258 IPR046955 GO:0003700
Seca1g02828 283 Gene3D - 198 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02828 Seca-Chr1 78635744 78638800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02828 198 268 G2-like Transcription Factor Family AT5G06800 53.521 2.70e-18 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca1g02828 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02828 - - gmx:102662952 334.724