Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02827 ATGAATGAGAACAAGGTTGATTACCTTGGAGTGATTCAACATAGTCATGGACTAAATGGAGATTTTAATTCTGAGCTTGGAAATCGTTCTTGTCAATATTTTGATACAAGACAAGCTTGGAATATGGGGTCATACATTCAACCACATGCCATGGCTGGAGGAGGAGCAGAACAGTTACCAAACATAGACTCTGGCAAATCATCTAACACTATTATGCAAAATTTTGAGTCACCAGCTTCTGCCTTTTATGCAGCAGAACACTGCATGGGATTCTCAGAATATGATTGCCAAGTTGGTAATAATCACTCATTGAGTTCTCAATTATATAAGATTAATGATTTGGAATTCCCTTTGTATCAATCTCCCAAGGAAACCCTTTTCTTGGATTTAGCAAACCAACCTGACCCCAACTTTGAATTTTCAAACACTTTGCAAGCAGTGGTGAAGTCTCAATTGAATAGTAATCAATGCCATAGATCCCCAGAAAAATCCAATAAAATTTCATTTGGGATTGGAAATTTTCCAGGTACTAAGTTCCTTTCAATTGAACAACAAAAGTTGTTAATTGATGGTATTGCCTCAGTTAGAAGGAGCTCATCAATTCCTAACAAAGGAAATCAGGATTATACTGTAAGCTTCTCTTCTCAGCATGAGAAGTTGTCTCCAAAATTTTCAGCAGGAAGTGTGTCAACTGCTTTTGGAAATTCTGCTTCTAATGGAACAGTAATCTCAAGTAAAACACGTATAAGATGGACTAATGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGGGGTGCTGAGAAGGCAACACCAAAAGCTATATTGAAGATGATGGACTCAGATGGTTTGACCATCTTTCATGTCAAAAGTCATTTGCAGAAATATAGAATTGCAAAGTTCATGCCAGATCCAACTCAAGGTAATTTCATTTTTACTAAACCTAAAAGGTGTCCTGTTTCAGGGAAATCAGACAAAAGGATCCATACAGAGGATGTGCAGCCTCTTGGTGTCAAAACTGGCTTGCAAATTAGAGAGGCACTTCAACTGCAATTAGATGCTCAAAGGCGTCTTCATGAACAACTAGAGATTCAGAGAACATTACAGTTGAGAATTGAGGAACAAGGCAGGCAGCTGAAAAAAATGTTTGACCAGCAGCAGAGAACAAGTCATAACCTCTTGACAACCAATGATGATACAACAATTAGTCATAAAACTGTTGAGGTTTCTATTTCTGAAGGGGCTGGAAATTCCTTCTTCCCTTCCTAA 1275 0.3804 MNENKVDYLGVIQHSHGLNGDFNSELGNRSCQYFDTRQAWNMGSYIQPHAMAGGGAEQLPNIDSGKSSNTIMQNFESPASAFYAAEHCMGFSEYDCQVGNNHSLSSQLYKINDLEFPLYQSPKETLFLDLANQPDPNFEFSNTLQAVVKSQLNSNQCHRSPEKSNKISFGIGNFPGTKFLSIEQQKLLIDGIASVRRSSSIPNKGNQDYTVSFSSQHEKLSPKFSAGSVSTAFGNSASNGTVISSKTRIRWTNDLHEKFVECVNRLGGAEKATPKAILKMMDSDGLTIFHVKSHLQKYRIAKFMPDPTQGNFIFTKPKRCPVSGKSDKRIHTEDVQPLGVKTGLQIREALQLQLDAQRRLHEQLEIQRTLQLRIEEQGRQLKKMFDQQQRTSHNLLTTNDDTTISHKTVEVSISEGAGNSFFPS. 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02827 424 SUPERFAMILY Homeodomain-like 244 300 IPR009057 -
Seca1g02827 424 NCBIfam myb-like DNA-binding domain, SHAQKYF class 246 301 IPR006447 GO:0003677
Seca1g02827 424 Coils Coil 347 367 - -
Seca1g02827 424 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 239 402 IPR044848 GO:0003700
Seca1g02827 424 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 243 303 IPR017930 -
Seca1g02827 424 FunFam Myb family transcription factor 245 303 - -
Seca1g02827 424 Pfam Myb-like DNA-binding domain 250 299 IPR001005 -
Seca1g02827 424 Gene3D - 245 304 - -
Seca1g02827 424 Pfam MYB-CC type transfactor, LHEQLE motif 344 390 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02827 Seca-Chr1 78597237 78601191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02827 233 419 G2-like Transcription Factor Family AT3G04450 46.524 2.09e-47 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca1g02827 Myb_DNA-binding 1.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02827 - - gmx:100527257 542.732