Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02817 ATGATGAATCTAACACCTGCAGCTCCTCCATCATCTAGAAATGTTGCAGCCCCACCATCTGTACCTAATGGGTCCGCACCATCTTCTGTTAAAACCCGCATATGCAACAAGTTTAATTCTGCTGAAGGCTGCAAATTTGGTGACAAATGCCATTTTGCCCATGGTGAATGGGAACTTGGCAAGCCTATTGCTCTCTCATTTGATGATCATCGTGCCATGGGACCAACTGCAACAGGTCGTATTGCTGGTCGAATGGAGCCTCCTCCTAGTCTTGCCACTAGCTTTGGTGCCAATGCCACTACCAAGATCAGTGTGGAAACTTCCCTTGTTGGAGCAATCATTGGGAAGGGTGGTGTGAATTCAAAGAAGATCTGTCGCCAAACTGGAGCCAAACTTTCAATTCAAGAACATGAATCTAATCCAAATCTTAGAAACATTGAACTTAAGGGAAGTTTTGAACAAATTAAGGAAGCAAGTAACATGGTAAAGGATTTCCTGCTGACCCTACAATTGTCTGCACCACCTAAAACAACCCCAGGTGTTCTTGGTGCCCCTGCCCCTCTTGGAAGCAACTATAAGACGAAGCTGTGTGAGAATTTTGCAAAAGGATCTTGCTCTTTTGGAGAAAGATGTCACTTTGCACATGGAGCTGCTGAATTGCGTAAATGA 669 0.4454 MMNLTPAAPPSSRNVAAPPSVPNGSAPSSVKTRICNKFNSAEGCKFGDKCHFAHGEWELGKPIALSFDDHRAMGPTATGRIAGRMEPPPSLATSFGANATTKISVETSLVGAIIGKGGVNSKKICRQTGAKLSIQEHESNPNLRNIELKGSFEQIKEASNMVKDFLLTLQLSAPPKTTPGVLGAPAPLGSNYKTKLCENFAKGSCSFGERCHFAHGAAELRK. 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02817 222 SUPERFAMILY CCCH zinc finger 28 60 IPR036855 GO:0046872
Seca1g02817 222 Gene3D - 24 61 - -
Seca1g02817 222 Gene3D - 188 222 - -
Seca1g02817 222 ProSiteProfiles Zinc finger C3H1-type profile. 29 57 IPR000571 GO:0046872
Seca1g02817 222 Pfam KH domain 100 163 IPR004088 GO:0003723
Seca1g02817 222 FunFam Zinc finger CCCH domain-containing protein 24 61 - -
Seca1g02817 222 SMART c3hfinal6 191 217 IPR000571 GO:0046872
Seca1g02817 222 SMART c3hfinal6 29 56 IPR000571 GO:0046872
Seca1g02817 222 MobiDBLite consensus disorder prediction 1 29 - -
Seca1g02817 222 Gene3D K Homology domain, type 1 95 168 IPR036612 GO:0003723
Seca1g02817 222 PANTHER CCCH ZINC FINGER/TIS11-RELATED 170 221 IPR045877 GO:0003729
Seca1g02817 222 CDD KH-I_AtC3H36_like 101 166 - -
Seca1g02817 222 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 31 56 IPR000571 GO:0046872
Seca1g02817 222 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 192 216 IPR000571 GO:0046872
Seca1g02817 222 ProSiteProfiles Type-1 KH domain profile. 98 162 - -
Seca1g02817 222 FunFam Zinc finger CCCH domain-containing protein 187 222 - -
Seca1g02817 222 SMART kh_6 97 167 IPR004087 GO:0003676
Seca1g02817 222 ProSiteProfiles Zinc finger C3H1-type profile. 191 218 IPR000571 GO:0046872
Seca1g02817 222 SUPERFAMILY CCCH zinc finger 190 221 IPR036855 GO:0046872
Seca1g02817 222 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 88 168 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02817 Seca-Chr1 78005796 78006464 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca1g02817 KH_1 3e-13 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02817 - - gmx:100803981 396.741