Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02807 ATGTTTTCGTGGGCTCAAAAGTTATTGTGTGCGTGCACTAGCCTGAATGAAGTTGACGATGACCCTCTGATGTGGAACAGGGACCTCGAGAGGCATTCCTCTGGTGATTTCTCCATGGCTGCGGTTCGTGCCAATGAACAAATGGAGGATTTCAGCCATGTTGAGACTGGCCGTAACGCAGTCTTCGCCGGAATTTACGATGGCCATGCCGGTGACGATGCTGCCCGCTATCTCAACAATTTCCTCTTCGAGTATCTAATAGGGTTTATTCAGGAGAGTCGTGATATGTCTGAAGTAGTTCTAAGGGATGCTGTTGTTGCTTCGGAGGTTGGGTTTCTGGAAGTTGTTCGACATGGTTATGTGGCAAAGCCAAATATGGGTAAAGTTGGTTCGTGTTGTCTGGTTTGTTGTATCTGGAGAAATTCACTATATATCGCCAACCTTGGAGATTCCCGTGCTGTTCTTGGTACTCTGGATAGTAGGAACAGGATAACTCCTCTCCAGTTAAACCAAGAGCACAATCTCAGTATAAACGACGTCAGAAATGAACTCAGGCTTGCCAATCCAGATGATCCCGGAATTGTGGTTCACACTCGTGGAGCATGGCGCGTTAAAGGCATCATCGAGGTTACCAGAACTATAGGAGATGCATATTTGAAGCGGCCACCGTTCACTTTAGAACCAAATTTCCCAGACTTCCAGGTGCCTAAACCTTTTGAACGACCAGTGTTATCAGCAGAGCCATTTGTTCACACAAGAGCATTACGAAACCAGGATAAATTCGTTATACTTGCATCAGATGGACTTTGGGATCACATATCAAGTCAGGAAGCAGTTAACATTGTACAAGGAAATCCACGAAATGGGATTGCAAAAAGACTTGTTAAGACTGCTCTAAGGGTGGCAGCTGGTAAAATGGTAAGAAGATATAGAGAGCTTGTTACGATTGAGCCGGGAAAGGACGGCAGGCGCACTATTCATGATGATATCAGTGTCATTGTTATCTTCATAAACCATCAGTTACTTGGGACGGGAAATTATGTCCCAGAGTTGTCCTTCAAAGGCTTCGTTGACAACGCTTTTCCATCAGATTTTAGAAAAGTCCGCGATTTGCTGACATGA 1122 0.4501 MFSWAQKLLCACTSLNEVDDDPLMWNRDLERHSSGDFSMAAVRANEQMEDFSHVETGRNAVFAGIYDGHAGDDAARYLNNFLFEYLIGFIQESRDMSEVVLRDAVVASEVGFLEVVRHGYVAKPNMGKVGSCCLVCCIWRNSLYIANLGDSRAVLGTLDSRNRITPLQLNQEHNLSINDVRNELRLANPDDPGIVVHTRGAWRVKGIIEVTRTIGDAYLKRPPFTLEPNFPDFQVPKPFERPVLSAEPFVHTRALRNQDKFVILASDGLWDHISSQEAVNIVQGNPRNGIAKRLVKTALRVAAGKMVRRYRELVTIEPGKDGRRTIHDDISVIVIFINHQLLGTGNYVPELSFKGFVDNAFPSDFRKVRDLLT. 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02807 373 CDD PP2Cc 33 337 IPR001932 -
Seca1g02807 373 ProSitePatterns PPM-type phosphatase domain signature. 62 70 IPR000222 GO:0043169
Seca1g02807 373 PANTHER PROTEIN PHOSPHATASE 34 335 IPR015655 GO:0004722|GO:0006470
Seca1g02807 373 Gene3D - 22 343 IPR036457 -
Seca1g02807 373 ProSiteProfiles PPM-type phosphatase domain profile. 33 337 IPR001932 -
Seca1g02807 373 Pfam Protein phosphatase 2C 58 303 IPR001932 -
Seca1g02807 373 SMART PP2C_4 26 335 IPR001932 -
Seca1g02807 373 SUPERFAMILY PP2C-like 32 338 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02807 Seca-Chr1 77806618 77808431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02807 23 365 PP2C-type Phosphatase Gene Family AT5G06750 53.161 8.44e-125 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02807 K01102 - gmx:100778238 397.127