Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02806 ATGGCAGATGCTGAGGACATTCAACCTTTGGTCTGTGACAATGGAACCGGAATGGTCAAGGCTGGTTTTGCCGGAGATGATGCTCCAAGGGCTGTGTTTCCTAGCATTGTGGGTCGTCCACGTCACACTGGGGTGATGGTTGGGATGGGACAGAAGGATGCGTATGTTGGTGATGAGGCTCAATCAAAGAGAGGTATTTTGACATTGAAATACCCCATTGAGCATGGTATTGTCAGTAATTGGGATGACATGGAGAAGATCTGGCATCACACTTTCTACAATGAGCTCCGTGTGGCTCCTGAAGAGCACCCTGTTCTTCTCACTGAAGCGCCCCTCAACCCAAAGGCCAACCGTGAGAAAATGACCCAGATCATGTTTGAGACCTTCAACACTCCTGCTATGTATGTTGCTATTCAAGCCGTCCTTTCCCTTTATGCTAGTGGACGTACAACTGGTATTGTTCTGGACTCTGGAGATGGTGTCAGTCACACAGTTCCTATCTATGAGGGGTATGCCCTCCCACATGCAATCCTGCGTTTGGACCTTGCAGGGCGTGATCTCACCGATGCCCTGATGAAAATCTTGACTGAGCGTGGGTACTCTTTCACCACATCTGCAGAGCGTGAAATTGTGAGGGACATGAAGGAAAAACTGGCCTATATTGCTCTTGATTATGAGCAGGAGTTAGAAACTTCCAAGACCAGCTCAGCTGTTGAGAAGAGCTATGAGCTACCTGATGGGCAGGTGATCACAATCGGTGCTGAAAGATTCCGGTGCCCTGAGGTTCTATTCCAGCCATCCATGATAGGGATGGAATCTCCTGGTATCCATGAGACAACATATAACTCGATCATGAAGTGTGATGTCGACATTAGGAAGGATCTCTATGGTAACATTGTATTGAGTGGTGGTTCCACAATGTTCCCTGGTATTGCTGATAGGATGAGCAAGGAGATCACAGCATTGGCACCAAGTAGCATGAAAATTAAGGTTGTAGCACCACCAGAGAGGAAGTACAGTGTCTGGATTGGAGGCTCCATTTTGGCATCCCTCAGCACCTTCCAACAGGTAAAGTGCATGGCTATAACTACATATGGATGA 1101 0.4768 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQVKCMAITTYG. 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02806 366 SUPERFAMILY Actin-like ATPase domain 149 357 IPR043129 -
Seca1g02806 366 FunFam Major actin 260 340 - -
Seca1g02806 366 FunFam Actin, alpha skeletal muscle 3 178 - -
Seca1g02806 366 PANTHER ACTIN 9 359 IPR004000 -
Seca1g02806 366 Pfam Actin 5 357 IPR004000 -
Seca1g02806 366 PRINTS Actin signature 63 85 IPR004000 -
Seca1g02806 366 PRINTS Actin signature 142 161 IPR004000 -
Seca1g02806 366 PRINTS Actin signature 117 130 IPR004000 -
Seca1g02806 366 PRINTS Actin signature 238 254 IPR004000 -
Seca1g02806 366 PRINTS Actin signature 28 37 IPR004000 -
Seca1g02806 366 PRINTS Actin signature 51 62 IPR004000 -
Seca1g02806 366 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Seca1g02806 366 SMART actin_3 7 360 IPR004000 -
Seca1g02806 366 Gene3D Actin; Chain A, domain 4 182 273 - -
Seca1g02806 366 Gene3D - 10 358 - -
Seca1g02806 366 Gene3D - 140 340 - -
Seca1g02806 366 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Seca1g02806 366 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Seca1g02806 366 FunFam Actin, muscle 182 273 - -
Seca1g02806 366 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02806 Seca-Chr1 77802689 77805039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02806 1 357 Cytoskeleton Gene Families AT5G09810 96.078 0.0 720
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02806 K10355 - gmx:100807341 710.679