Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02790 ATGGCCCTGATAGTGCCGTGTTGGAACAAAAGACCTGATCACGGCCGTCTACCCACATCAAAGCAGCGAAGCCACATGCCCCCAGGCCCCAGCTTGGACATTCAAGCCGTGATGGGGGAAGAGAATTCTGATGCAATGAACCTTGATTTGAATCTGGGTCCAGGCCCGGAGCCAGCTACTGGGTCCATAACCAATGAAGCTGTGAACTTGGACGATTGGATTGGGGACCCTCTTCACAGAATTAGCGAAGCTGTGAGGCTTAGGGCGCGACATAGGTGGAGATGGCGGCATCTACCTATCCCTCCTCCTGAACTTCATGTTCACGTTCCATCTGAAGCTGCAAGACATTTTTATATCCCACCTCCACCCCTACTCCCAGATATGCCGGTGGAATTGGAAAGTTTTTTGGTCAATTCTGGTAATGCAAGCGCGTTACAGGCTGGGGAAGGAAGTGTGGCGGCTGAGGAGAGACCGGAGGAGGAGGTGCCGAAAGCGTGTGAGATCAACAATGGTGTTACTGAGGATGAGACATCACAGAAGAAGGATGATGTTGAAAAGGGTAGTGGCAATGATGGAGACTTCTTTGATTGTAATATCTGTTTGGACCTGGCTAGGGATCCTGTTGTGACTTGTTGTGGTCATTTGTTTTGTTGGCCATGCTTATATAGATGGTTGCATCTTCATTCGGATGCTAAGGAGTGTCCAGTTTGCAAGGGAGAGGTGACTCTTAAGAGTGTTACCCCAATATATGGCCGTGGAAACAATGCTCGTGGTCCTGAGGAGGATTCCAGTCTTAAGATCCCTCCTAGGCCTCAAGCAAGGCGTGTTGAGAGCTTGAGACAAACTATTCAAAGAAATGCATTTGCACTCCCTGTGGAAGAGATGATTCGGCGTCTTGGAAGCAGAATTGATTTTACTAGGGATTTAGTTCAGCCGCGTGAACAAGACAATGGTCGTGAACCAGCAGAGACAACAAGTTCTGTAATAAGTAGGTTTTTGACATCTCGAGGCTTGAGGAGAGAGCAGAATCTTGTGGCACCCCCTCAAGATGATGTAGTGGGTTTACCACAGAACAATGTTGTTAGTGCTGAGGTAGGGGGTGATAACCGGAGGGTGCAATCCCTATTGCTTCGAAGAACACAATCACATAGAGCAACACTTTCTACTCTTTCATCAGCACTGACTTCTGCTGAAAGGTTAGTTGAGGCATATTTCCGTAGCAATCCATTAGGTAGAAACCAAGAACAACCTCCTCCAGTTGATGACAGAGATTCCTTTTCAAGCATTGGTGCTGTCATAAACTCAGAGAGTCAAGTGGACACTGCTGTAGAAATTGATTCCATGGTATCCTTGTCAACATCCTCCTCTAGGAGGAGAAATGATGCTTCAAGAGTGTCTGATGTGGATAGTGGAGATTCCCGTGCTCCAAGGCGCAGACGTATCAACTGA 1449 0.4776 MALIVPCWNKRPDHGRLPTSKQRSHMPPGPSLDIQAVMGEENSDAMNLDLNLGPGPEPATGSITNEAVNLDDWIGDPLHRISEAVRLRARHRWRWRHLPIPPPELHVHVPSEAARHFYIPPPPLLPDMPVELESFLVNSGNASALQAGEGSVAAEERPEEEVPKACEINNGVTEDETSQKKDDVEKGSGNDGDFFDCNICLDLARDPVVTCCGHLFCWPCLYRWLHLHSDAKECPVCKGEVTLKSVTPIYGRGNNARGPEEDSSLKIPPRPQARRVESLRQTIQRNAFALPVEEMIRRLGSRIDFTRDLVQPREQDNGREPAETTSSVISRFLTSRGLRREQNLVAPPQDDVVGLPQNNVVSAEVGGDNRRVQSLLLRRTQSHRATLSTLSSALTSAERLVEAYFRSNPLGRNQEQPPPVDDRDSFSSIGAVINSESQVDTAVEIDSMVSLSTSSSRRRNDASRVSDVDSGDSRAPRRRRIN. 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02790 482 Pfam Zinc finger, C3HC4 type (RING finger) 197 237 - -
Seca1g02790 482 MobiDBLite consensus disorder prediction 460 482 - -
Seca1g02790 482 ProSitePatterns Zinc finger RING-type signature. 212 221 IPR017907 -
Seca1g02790 482 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 173 365 IPR045103 GO:0005783|GO:0006511|GO:0061630
Seca1g02790 482 FunFam E3 ubiquitin-protein ligase RMA3 165 286 - -
Seca1g02790 482 MobiDBLite consensus disorder prediction 450 482 - -
Seca1g02790 482 CDD RING-HC_AtRMA-like 195 238 - -
Seca1g02790 482 SUPERFAMILY RING/U-box 192 250 - -
Seca1g02790 482 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 286 IPR013083 -
Seca1g02790 482 MobiDBLite consensus disorder prediction 11 30 - -
Seca1g02790 482 SMART ring_2 197 237 IPR001841 -
Seca1g02790 482 MobiDBLite consensus disorder prediction 147 187 - -
Seca1g02790 482 ProSiteProfiles Zinc finger RING-type profile. 197 238 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02790 Seca-Chr1 77626178 77628430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02790 38 473 C3H Transcription Factor Family AT3G58030 53.863 9.86e-138 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02790 K10666 - gmx:100811099 692.575