Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02779 ATGTTGTGCTGCGGAGGTGCAGAGGAGGAGAGTAGTGGTCCACCTGCAAACCAATACACTGCACCACCTAGAGGGGGTAGCACATACGGTGGAGGTGGAGGGAATATAGGCCCTGATAGAGGAGAGCCAAGGGGCAATGTTGCTAAGAGTGGTGCTCCACAGAAAGTTTTACCAATTGAGATACCCTCTATGCCATTGGATGAGATAAATAGGTTAACAGGAAATTTTGGTTCAAAGGCTTTTATTGGTGAAGGTTCCTATGGGAGGGTTTTCTATGCAAAATTGAGTGATGGAACTGAAGCTGCAATTAAGAAGCTTGATACCAGTTCTTCACAAGAACCTGACACTGATTTTGCTGCTCAGTTATCAGTTGTTTCAAGACTGAAGCATGATCATTTTGTGGAGTTGATTGGATATTGCCTAGAGGCAGACAACAAAATATTGGTTTATCAATATGCAAGTTTGGGTTCATTGCATGACATATTACATGGAAGGAAGGGTGTACAAGGGGCTGAACCAGGTCCAGTTTTAAGCTGGAACCAGAGAGCAAAAATTGCATTTGGTGCAGCAAAAGGACTAGAGTTTCTTCATGAAAAGGTTCAGCCTTCTATAGTTCATCGTGACGTTAGATCCAGCAATGTCTTACTGTTCAATGACTATGAGGCCAAGATTGCTGATTTCAGCTTGACAAATCAGTCTTCTGATACAGCAGCTCGGTTACATTCAACAAGAGTCTTGGGAACATTTGGCTACCATGCTCCAGAGTATGCTATGACAGGGCAGATAACCCAGAAAAGTGATGTTTACAGTTTTGGGGTTGTGCTTTTAGAACTCTTGACAGGAAGAAAGCCAGTAGATCACACAATGCCCAAAGGGCAACAAAGTCTTGTAACTTGGGCAACTCCAAGGTTGAGTGAGGACAAAGTGAAACAATGTGTGGATCCTAAGCTAAACAATGACTACCCACCAAAGGCTATTGCTAAGTTAGCAGCTGTTGCAGCACTTTGTGTTCAATATGAAGCTGACTTCAGGCCAAACATGACAATTGTTGTCAAAGCTCTCCAGCCACTTCTCAATGCAAAACCGGCTGGTCCTGACCATAGTGCTTGA 1110 0.436 MLCCGGAEEESSGPPANQYTAPPRGGSTYGGGGGNIGPDRGEPRGNVAKSGAPQKVLPIEIPSMPLDEINRLTGNFGSKAFIGEGSYGRVFYAKLSDGTEAAIKKLDTSSSQEPDTDFAAQLSVVSRLKHDHFVELIGYCLEADNKILVYQYASLGSLHDILHGRKGVQGAEPGPVLSWNQRAKIAFGAAKGLEFLHEKVQPSIVHRDVRSSNVLLFNDYEAKIADFSLTNQSSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCVDPKLNNDYPPKAIAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNAKPAGPDHSA. 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02779 369 FunFam probable protein kinase At2g41970 49 152 - -
Seca1g02779 369 SUPERFAMILY Protein kinase-like (PK-like) 55 354 IPR011009 -
Seca1g02779 369 MobiDBLite consensus disorder prediction 1 51 - -
Seca1g02779 369 Gene3D Phosphorylase Kinase; domain 1 49 152 - -
Seca1g02779 369 Pfam Protein tyrosine and serine/threonine kinase 81 354 IPR001245 GO:0004672|GO:0006468
Seca1g02779 369 ProSitePatterns Tyrosine protein kinases specific active-site signature. 204 216 IPR008266 GO:0004672|GO:0006468
Seca1g02779 369 ProSiteProfiles Protein kinase domain profile. 76 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g02779 369 ProSitePatterns Protein kinases ATP-binding region signature. 82 105 IPR017441 GO:0005524
Seca1g02779 369 Gene3D Transferase(Phosphotransferase) domain 1 154 364 - -
Seca1g02779 369 FunFam PTI1-like tyrosine-protein kinase 3 154 363 - -
Seca1g02779 369 SMART tyrkin_6 76 354 IPR020635 GO:0004713|GO:0006468
Seca1g02779 369 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 23 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02779 Seca-Chr1 77476003 77479680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02779 40 361 Receptor kinase-like Gene Family AT3G58690 43.252 1.96e-85 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Seca1g02779 PK_Tyr_Ser-Thr 3.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02779 - - gmx:100812507 671.389