Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02765 ATGGCTCCACCAAAAGGTGATAAGAAGGCTGATCCAAAGGCACAAGCCTTGAAAACTGCTAAAGCAGTGAAAGAAGGCAAGAAGATCCGAACATCTGTCACGTTCCATAGGCCAAAGACATTGACAAAGGATAGGAGCCCCAAATACCCTCGCATTAGTGCCATGCACAGGAACAAGCTTGATCACTACCAGATTCTGAAATTCCCTCTCACCACTGAGTCGGCAATGAAGAAAATTTTAGACAACAACACTTTGGTTTTCATTGTTGACATCCGTGCTGACAAGAAGAAGATAAAGGATGCAGTCAAGAAAATGTATGACATCCAGGCCAAGAAGGTTAACACCTTGATCAGGCCTGATGGTACCAAGAAGGCCTATGTCAGGTTGACTCCTGATTATGATGCATTGGATGTAGCTAACAAGATTGGGATTATCTAG 438 0.4361 MAPPKGDKKADPKAQALKTAKAVKEGKKIRTSVTFHRPKTLTKDRSPKYPRISAMHRNKLDHYQILKFPLTTESAMKKILDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII. 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02765 145 Pfam Ribosomal protein L23 65 127 IPR013025 GO:0003735|GO:0005840|GO:0006412
Seca1g02765 145 FunFam 60S ribosomal protein L23a 24 145 - -
Seca1g02765 145 Hamap 50S ribosomal protein L23 [rplW]. 65 145 IPR013025 GO:0003735|GO:0005840|GO:0006412
Seca1g02765 145 ProSitePatterns Ribosomal protein L23 signature. 123 138 IPR001014 GO:0019843
Seca1g02765 145 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 62 138 IPR012678 GO:0003735|GO:0005840|GO:0006412
Seca1g02765 145 PANTHER 60S RIBOSOMAL PROTEIN L23A 6 145 IPR013025 GO:0003735|GO:0005840|GO:0006412
Seca1g02765 145 MobiDBLite consensus disorder prediction 1 29 - -
Seca1g02765 145 Gene3D - 26 145 IPR012677 -
Seca1g02765 145 Pfam Ribosomal protein L23, N-terminal domain 13 56 IPR005633 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02765 Seca-Chr1 77254647 77255104 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02765 28 145 Cytoplasmic Ribosomal Protein Gene Family AT3G55280 91.525 7.79e-65 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02765 K02893 - pvy:116105236 248.825