Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02763 ATGCCTCCGAGGAAGAAGCCCAACTCTACCTCATCTTCTTCTTCGGCCTCTTCTAAGAAGCCCCATCCACAACCTTCCAAGTATGGAATCCAGCACTTCTTTGACCGTCACACCCTTCTCGCCTCTCAGAAGCAGCAAGCCAACAACAATGCAAGCCCCAACATTGTTGGAGTTCCCACTTCTCATGCTGTTTCCGGGTCCTCCATTCCTCTCCCACCTCCCGGAAAACCCAACACTGGCGAGGGTCCGTCTGAGAATTCGGTGTTACCAGTGACTAATGCCGCAGAAACTCTCTCTGAGTCTGAGGTGTCTCCGGAGATGTCCAAGTCCGTGTCGCTTAAGCGCTTCAAATTCTCACCTGGAATGTTTATCAAGCAGAGCCAGGATGATGGGGTTGATGAGGTTACATGGAAGATATCTCCAGTGAATGAAAGGCTCCAAGCAGTTTCAAAACACATGCCTGAGATAATTAAAGCTTTGGCTGACTCCTCGAGGATCAATTTGTTGCCAATTCGCAACTGCTCAGAAGATAAGAATTCCCTGGATAAAGATGGAAAGGTTGAAAAGTTGCTTACTAATACTTCACCAACTCCCAATCCTTCTGCAAAAGCTCTGGTGCCAGTGAGTAAATTAGGCTTGAATAGGATAAACCCTGACCAAGACGTGGAGTTTAATGTCAATGCAACTACTTTCAGTAATTCTGCAGTACCTGGTGGACAAAGCCCCTTCAGAACTCCACCATCATTGTCTTATTGCCAGGATAAGCTTGCCAAAGATGTTGAACACAGTGGACCATCTGACCAGCTTTTTTTAAGACAGCACAAAAAGGCATTGCTTGAACTGTTGGATCAAGTTGAAGATGCCATCGCTGTTGACAATGCTGCAGTTTGGAATAAAACCACTTATTCCTTTCAATCTCAAGATGGAATAGCTAATCAGCTACCTGTCAGAGCTAACTGGGCAGTAGAAAGGACAAAATCACATACACCTAAGGAAACTGTTGGTGTTTTCTCCAACTCTAATTATTTGGTTTTGGAGGTATCTGAAAAACGCAGGCCTGCCGATTCATCTGCTGCTCAATGCCCATACAAGGTGCTTCGTTTACTAAATGAAAAAACTGGAGAAGAGCGGGTTGTAAACTTGTGGGATGAGTGGTATTACAGCATTATTGCACCTGGAGATACTGTGAACATAATCGGTCATTTTTATGAAGGAGGAAATTATGATATTGATCATGATCATAATTTTTTGATTGTGCACCCAGATACTCTGGTGTCTGGAACACAGGTTACTTCCAGTTTTTGTTGCCCTAGGAGGTCTGTGTTAGATGAAAGGCTAAAAAAATACAATGAGTACTCAACTGCAGCATTAACTGGAACCTTGCTTCACCAAATTTTTCAGGCTGGGCTTACAAACGAGAATCCTACAGTAAACTTATTGGAAGATTATGCAGAAGTGATAGTACAGAGAAATATTGAAAGTTTATATGCGTGTGGAGTAAATGAAAATGATGTTCACAAAACCATGATTGATGCTATCCCAAGAATATTAAATTGGATCAAGCTGTTTAAAAATACGGAGGAAGGACATGACCCTAATGTTAATTTTGGATGTGATGATGGGCTGAAGAAAGTTGGCATATATGAGGTAATTGATATAGAAGAAATGGCTTGGGCGCCAACATATGGTTTGAAAGGGATGATTGATGCTTCGGTCAGAGTAAAAGTTCAATCAAGAAAAGATGAACCAGAGGAAAAGATCATGCCGGTAGAGTTCAAAACTGGAAAAACTCCAAATAGCCAGTCATCAGTAGAACATAGTGCCCAAGTAATTTTGTACACTCTCCTGATGTCTGAAAGGTACCAGAAGACTATTAATTCTGGTCTTCTGTATTATCTTCAATCAGATCAGACACAGGGCATTGTGGTTCAAAGATCTGATTTAGTTGGACTAATAATGCGACGTAATGAACTAGCAAGTGATATTCTTAAGGCATTAACCTTGCAACAACTGCCACCAATGATACAGAGTCCTAGCATTTGCAGAGGTTGTCGCCATCTTAATGTCTGCAACATTTATCATAAGGCACATGGTGGAAGCATAGGGAGCAGTGGATTGGGAAGTTTGTTTGATTCATATACCAGTCACCTGACTTCTGCTCATTCTAAGTTCCTTTGCCATTGGGATCATTTGATTGACTTAGAAGCTAAAGAGACTGAGCTTTTAAAGAAAGAGGTGTGGCGATCACATAGTTTAAAAACTCCAAACAATGGTGGCCTTTCCTCTATTGTTCTTGATGCTTCACAAGGAATACCTCATCAGAAATCCCTCAAAGATAATCGTTTCATTTATCGTTTTGTACAACAAGATTCTTCTTGCATCTCTAAGGTTTCTGAGGGTGATCCTTCTAGCGCCTCTTTGAAAGGTGACTTAAATCGCACACTTCGAAGTGGAGACCATGTGGTTGGAACATATATGTTATATGTGCCAAGCTTGTTGCAAATATACTCAACCCGAGACCCCCTAAGAGACTTGGTAAACATTTTTGTGGGCTGA 2556 0.4174 MPPRKKPNSTSSSSSASSKKPHPQPSKYGIQHFFDRHTLLASQKQQANNNASPNIVGVPTSHAVSGSSIPLPPPGKPNTGEGPSENSVLPVTNAAETLSESEVSPEMSKSVSLKRFKFSPGMFIKQSQDDGVDEVTWKISPVNERLQAVSKHMPEIIKALADSSRINLLPIRNCSEDKNSLDKDGKVEKLLTNTSPTPNPSAKALVPVSKLGLNRINPDQDVEFNVNATTFSNSAVPGGQSPFRTPPSLSYCQDKLAKDVEHSGPSDQLFLRQHKKALLELLDQVEDAIAVDNAAVWNKTTYSFQSQDGIANQLPVRANWAVERTKSHTPKETVGVFSNSNYLVLEVSEKRRPADSSAAQCPYKVLRLLNEKTGEERVVNLWDEWYYSIIAPGDTVNIIGHFYEGGNYDIDHDHNFLIVHPDTLVSGTQVTSSFCCPRRSVLDERLKKYNEYSTAALTGTLLHQIFQAGLTNENPTVNLLEDYAEVIVQRNIESLYACGVNENDVHKTMIDAIPRILNWIKLFKNTEEGHDPNVNFGCDDGLKKVGIYEVIDIEEMAWAPTYGLKGMIDASVRVKVQSRKDEPEEKIMPVEFKTGKTPNSQSSVEHSAQVILYTLLMSERYQKTINSGLLYYLQSDQTQGIVVQRSDLVGLIMRRNELASDILKALTLQQLPPMIQSPSICRGCRHLNVCNIYHKAHGGSIGSSGLGSLFDSYTSHLTSAHSKFLCHWDHLIDLEAKETELLKKEVWRSHSLKTPNNGGLSSIVLDASQGIPHQKSLKDNRFIYRFVQQDSSCISKVSEGDPSSASLKGDLNRTLRSGDHVVGTYMLYVPSLLQIYSTRDPLRDLVNIFVG. 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02763 851 CDD DNA2_N-like 426 662 - -
Seca1g02763 851 MobiDBLite consensus disorder prediction 38 67 - -
Seca1g02763 851 MobiDBLite consensus disorder prediction 7 24 - -
Seca1g02763 851 FunFam DNA replication helicase Dna2 537 691 - -
Seca1g02763 851 Gene3D - 425 691 IPR011604 -
Seca1g02763 851 Pfam Domain of unknown function DUF83 583 691 IPR022765 -
Seca1g02763 851 PANTHER CRISPR-ASSOCIATED EXONUCLEASE CAS4 413 696 - -
Seca1g02763 851 Pfam DNA replication factor Dna2 371 574 IPR014808 -
Seca1g02763 851 MobiDBLite consensus disorder prediction 1 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02763 Seca-Chr1 77229314 77251339 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02763 1 822 Core DNA Replication Machinery Family AT1G08840 50.358 0.0 746
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02763 K10742 - qsu:111998300 959.518