Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca1g02753 | ATGCCGTTAGCGCCAGAGTACCGGCCAACCGCGACAGAGTTCGAAGATCCAATTGCTTATATTTTCAAGATCGAGAAAGAAGCTTCAAAGTACGACATTTGTAAAATCATTCCACCGTTCCCACCATCGTCAAAGAAAACCGCCATAGCCAACCTAAACCGTTCACTCCCCAACTCCACATTCACAACACGACACATTCACACTCCACATTCACATTCACGACACGACATCTGCAAAATCATTCCACCGTTCCCACCGTCGTCAAAGAAAACACACCAAGTCTTTTGA | 288 | 0.4583 | MPLAPEYRPTATEFEDPIAYIFKIEKEASKYDICKIIPPFPPSSKKTAIANLNRSLPNSTFTTRHIHTPHSHSRHDICKIIPPFPPSSKKTHQVF. | 96 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca1g02753 | 95 | ProSiteProfiles | JmjN domain profile. | 4 | 45 | IPR003349 | - | |
Seca1g02753 | 95 | Pfam | jmjN domain | 5 | 38 | IPR003349 | - | |
Seca1g02753 | 95 | SMART | JmjN_1 | 3 | 44 | IPR003349 | - | |
Seca1g02753 | 95 | Gene3D | Cupin | 1 | 76 | - | - | |
Seca1g02753 | 95 | PANTHER | LYSINE-SPECIFIC DEMETHYLASE | 1 | 68 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca1g02753 | Seca-Chr1 | 76542806 | 76543093 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca1g02753 | 1 | 56 | C2H2 Transcription Factor Family | AT5G04240 | 69.643 | 1.43e-19 | 80.1 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | Jumonji | Seca1g02753 | JmjN | 2.9e-12 | CL0029 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca1g02753 | - | - | psat:127084261 | 112.849 |