Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02753 ATGCCGTTAGCGCCAGAGTACCGGCCAACCGCGACAGAGTTCGAAGATCCAATTGCTTATATTTTCAAGATCGAGAAAGAAGCTTCAAAGTACGACATTTGTAAAATCATTCCACCGTTCCCACCATCGTCAAAGAAAACCGCCATAGCCAACCTAAACCGTTCACTCCCCAACTCCACATTCACAACACGACACATTCACACTCCACATTCACATTCACGACACGACATCTGCAAAATCATTCCACCGTTCCCACCGTCGTCAAAGAAAACACACCAAGTCTTTTGA 288 0.4583 MPLAPEYRPTATEFEDPIAYIFKIEKEASKYDICKIIPPFPPSSKKTAIANLNRSLPNSTFTTRHIHTPHSHSRHDICKIIPPFPPSSKKTHQVF. 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02753 95 ProSiteProfiles JmjN domain profile. 4 45 IPR003349 -
Seca1g02753 95 Pfam jmjN domain 5 38 IPR003349 -
Seca1g02753 95 SMART JmjN_1 3 44 IPR003349 -
Seca1g02753 95 Gene3D Cupin 1 76 - -
Seca1g02753 95 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02753 Seca-Chr1 76542806 76543093 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02753 1 56 C2H2 Transcription Factor Family AT5G04240 69.643 1.43e-19 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca1g02753 JmjN 2.9e-12 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02753 - - psat:127084261 112.849