Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02744 ATGTCTTGTGCCACCGCTTTGCTTCTCCTCCTGGCCACCATGATCTCCTCTTCCTCTTGCTACAACGAAATGGAGGTTCTGCAGATGGCCCAAATCCAGGTCTCACAAGCCAAGAGTTGGGCTGATCACTCTGTGAGATTGAATGGCCATTTCCATCAAACAATAAGTGATTGTGCCAAGCTCTATGGGGAGAGTGAGTCTAGGCTTTCTCACATGATGGCTGACCAGACTGCTTATACCACACAAGATGCACTTATATGGATAAGTGCTGTTATGACAAACCACAGGACTTGCTTGGATGGCTTGCAGGAAAAAGGGTATCTCCAACCTCAGCTTTTGGGTAGAAACTTGACCATGCTGCTTACGAAAGCTCTAGTTTCGTATGCAAATTTAAATAATGAAGACAAAGCCAAAGAGCCACCTAAGGAAACGACGACGTCATCAGAATCATCAGATAGCGGTCTTCTGGCATCATGGAGTAGTGGAACTTCTAATGCAGACTTCACAGTGGCACAGGACGGTTCAGGTACCCACAAAACAATCACCGAAGCGGTAAATGCACTCGATCATAATCGTCCTTCAAGACAAGTTATTTACGTTAAATCAGGAGTCTACAATGAGAATGTGGAAATTGGAGGCAAGTTGAAGAATGTGATGTTTGTAGGAGATGGAATAGACAAAACTATTGTCACTGGCAACAGAAATGTCATTCAGGGTTATTCAACTATGAGCTCAGCTACATTTGATGTATCTGGAGATGGGTTTTGGGCAAGGGATATGACGTTTGAGAACACGGCAGGCCCTGACGGCCACCAAGCAGTGGCACTAAAGGTCAGTTCAGACCGATCAGTCTTCTATAGATGCAGCTTCAAAGGATACCAAGATACTCTTCTTGTCCATTCAAATAGGCAATTTTTCCGTGATTGTCACATATATGGAACCATTGATTTCATATTTGGGGATGCCTCAGTGGTCTTCCAAAATTGTCAAATCTTTATAAGGAAACCAAAGGACTACCAAGCCAACTTCATAACAGCACAAGGAAGAGATAATCCTGATAAACCAACTGGGATTTCAATCCAGAGTTGTCAGGTTAAGCCTGCACCTGATTTTGACACTTCAAAGGACCCAATGATCAAGAGCTACTTAGGAAGGCCTTGGAAACAGTATTCAAGGACAGTGTTTCTAAAGACAGATTTAGATGGGATGATTGATCAAAAGGGATGGGGTGAATGGGATGGAGACTTTGCACTTTCAACTTTGTACTATGGAGAGTATATGAACACTGGAAGTGGTGCCTCTACACAGAATAGGGTGCAGTGGCCTGGTTTCCATGTGCTGAATACTGCTGATGAGGCTACACCATTCACCGTCACTCAGCTTTTGCAAGGAGAACAGTGGATTCCAGCTACAGGTGTGGAATTCTGGTCTGGAATTTAA 1440 0.4389 MSCATALLLLLATMISSSSCYNEMEVLQMAQIQVSQAKSWADHSVRLNGHFHQTISDCAKLYGESESRLSHMMADQTAYTTQDALIWISAVMTNHRTCLDGLQEKGYLQPQLLGRNLTMLLTKALVSYANLNNEDKAKEPPKETTTSSESSDSGLLASWSSGTSNADFTVAQDGSGTHKTITEAVNALDHNRPSRQVIYVKSGVYNENVEIGGKLKNVMFVGDGIDKTIVTGNRNVIQGYSTMSSATFDVSGDGFWARDMTFENTAGPDGHQAVALKVSSDRSVFYRCSFKGYQDTLLVHSNRQFFRDCHIYGTIDFIFGDASVVFQNCQIFIRKPKDYQANFITAQGRDNPDKPTGISIQSCQVKPAPDFDTSKDPMIKSYLGRPWKQYSRTVFLKTDLDGMIDQKGWGEWDGDFALSTLYYGEYMNTGSGASTQNRVQWPGFHVLNTADEATPFTVTQLLQGEQWIPATGVEFWSGI. 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02744 479 Pfam Plant invertase/pectin methylesterase inhibitor 36 113 IPR006501 GO:0004857
Seca1g02744 479 Gene3D - 161 479 IPR012334 -
Seca1g02744 479 SUPERFAMILY Pectin lyase-like 163 478 IPR011050 -
Seca1g02744 479 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 131 IPR035513 -
Seca1g02744 479 PANTHER PECTINESTERASE 25 469 - -
Seca1g02744 479 ProSitePatterns Pectinesterase signature 2. 311 320 IPR033131 -
Seca1g02744 479 Pfam Pectinesterase 167 465 IPR000070 GO:0030599|GO:0042545
Seca1g02744 479 FunFam Pectinesterase 161 479 - -
Seca1g02744 479 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 26 119 IPR035513 -
Seca1g02744 479 SMART PMEI_2 10 127 IPR006501 GO:0004857
Seca1g02744 479 MobiDBLite consensus disorder prediction 132 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02744 Seca-Chr1 76438707 76441051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02744 7 479 Carbohydrate Esterase AT3G60730 52.268 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02744 K01051 - gmx:100810741 712.22