Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02731 ATGATGTCCTCAGGACGAACTGGACAGGTTAATATTAATCCAAACAATCAAAACCAAATCAGACCTAGTATATCAATTCGAGGGTTCCAAGAACAGTGCCCTTCTTCAAGTTCTCTCATTGCTGGAAGTGGTCAAATGTTTCTAGATAGGTTTTTTGGGCCAAATATTAATCTCCCTCAAGAAATCAGTGCTAATATTGTTTCAAATAATAGTTGCAATGTTGGTGTCTCTCTTCATGAATCCACTACTGGGACGAGGTTGAATATTGCTCCTTCAAGTGATTCCTTTACTAGAAGCCATCAAGGACTTCCCAATAGCTTCTATGGATCAGTTTTGCACTACCAAGGGACTCGAAGTAGAGGACATGGAGAGATGAGCCCTGCCATTAATCATGAAGTATTACCCTTGAGCTTATCCCCTTATCCAGATGAATCATCAGAAAATCAGTATGGAACCAATTCTGCTACAGTGAATGCAGATAATAACAATGGATATGTAGTGGAAGAACAAGGTGACGATGGAAGCACCTCAACAAACATAATGTGTTTACCATTCAAGAGAAGTTCTACTGATTTTGGGGGAGAATTTCAAGTAGGTGAAAGTTCGAGCATGGCTGCCCAAGTCGAAATAGCCGAACAACATGTTGTTACTTCCCATGTTGATGTCAATGCCAATTCTAATGCAAATGAAAATATGAACCCATCACCATTAAACATTGGTTCTGCTCAATTAATTACTTTCCATATAGAAAGTACTCAAGGCCAACCAACTTTAGTTCCGTTTGGAAGCTTAGTGCAAATGATTCACCCTTCTATTGTAACAAGCAATTCTACAATGGAGATCCGACAAAGTTCAATGGTAAGAATAAATGAGATTCAAGGTGGTGGTGATGTTGAACAACCACTTCTAGTCGATGACAATGATGACATGAGAGACAATATGGAGGCTCAGGCTTTCACCACAGTTGAGGAACTTGATGAAATTGTGGGAATGTTGCTTGGACTGCCGGAGGAGACAATTTTGAAGTATATTAAACTTAAAAATTTAGTGCTGGAAGATAAGGAGACTCAAGAAGTATGTTGCATATGTCAGGAAGAATATGTTAATGGAGATGAAGTTGGGAAGCTAGATTGTGAGCATAATTTTCATACTGAGTGCATAAAACAATGGCTCAAGCAAAAAAATGAATGCTCCATTTGCAGACAAATGGCATTACTTTCAAATGATGAAGGAGAAGAGAATGATGATGAAGAGCAAATTCCCATCATGGAATTATTTTATATATAG 1287 0.3831 MMSSGRTGQVNINPNNQNQIRPSISIRGFQEQCPSSSSLIAGSGQMFLDRFFGPNINLPQEISANIVSNNSCNVGVSLHESTTGTRLNIAPSSDSFTRSHQGLPNSFYGSVLHYQGTRSRGHGEMSPAINHEVLPLSLSPYPDESSENQYGTNSATVNADNNNGYVVEEQGDDGSTSTNIMCLPFKRSSTDFGGEFQVGESSSMAAQVEIAEQHVVTSHVDVNANSNANENMNPSPLNIGSAQLITFHIESTQGQPTLVPFGSLVQMIHPSIVTSNSTMEIRQSSMVRINEIQGGGDVEQPLLVDDNDDMRDNMEAQAFTTVEELDEIVGMLLGLPEETILKYIKLKNLVLEDKETQEVCCICQEEYVNGDEVGKLDCEHNFHTECIKQWLKQKNECSICRQMALLSNDEGEENDDEEQIPIMELFYI. 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02731 428 ProSiteProfiles Zinc finger RING-type profile. 360 401 IPR001841 -
Seca1g02731 428 SUPERFAMILY RING/U-box 359 405 - -
Seca1g02731 428 SMART ring_2 360 400 IPR001841 -
Seca1g02731 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 340 405 IPR013083 -
Seca1g02731 428 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 82 405 IPR045191 GO:0061630
Seca1g02731 428 Pfam Ring finger domain 360 401 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02731 Seca-Chr1 75694649 75698620 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02731 305 405 C3H Transcription Factor Family AT2G15530 41.667 6.12e-20 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02731 - - oeu:111367418 103.99