Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02728 ATGATAGCAAGTTCAACAGAAGGTTATGAGGCTAAGCAAGAAGGTGACACCATTAACATTGCTCACAAGTTCTCCAAGACATCCTCTACTACAAGACAATGGTCAGGGTTCACAGATCCTATAATTGTGAGAGTATCACATTCTTTTGGAGGAAAACATAGGCAAAGCAAGGTTTGCACCATAAGAGGATTAAGGGACAAAAGGATTAGGCTCTTTGTACCAACAACAATTCAATTATATGATCTTCAAGACAAGCTTGGACTCAGCCAACCAACCAACGTAATACATTGGTTGCTTGAAGCTACTAAATTTGACATTGATAACCTTCCTCCACTTCAATTCCCTCACGGCTTTCATCAATTTACTCAACATTCAAAAAGCCTACTTCCTTACCATGATTCAAGTAACTCCTCAGAGCTTTCACTTAGACCTTTCTATTATGCTAATTCCACTCTTTTAAGAGATGGGGAATTTTAA 477 0.3836 MIASSTEGYEAKQEGDTINIAHKFSKTSSTTRQWSGFTDPIIVRVSHSFGGKHRQSKVCTIRGLRDKRIRLFVPTTIQLYDLQDKLGLSQPTNVIHWLLEATKFDIDNLPPLQFPHGFHQFTQHSKSLLPYHDSSNSSELSLRPFYYANSTLLRDGEF. 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02728 158 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 33 134 IPR005333 GO:0003700
Seca1g02728 158 ProSiteProfiles TCP domain profile. 51 109 IPR017887 -
Seca1g02728 158 Pfam TCP family transcription factor 51 126 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02728 Seca-Chr1 75475064 75475540 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02728 7 121 TCP Transcription Factor Family AT5G60970 59.200 3.25e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca1g02728 TCP 1.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02728 - - gmx:100804574 219.55