Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02722 ATGAAGGCCGTGCCCCTACCCTTTCAGGAATACAGAGGGAAAGGGGTGTTAGATTTTAGTTCGGGTGTTTCAGATTCGTTGTTGGTACCACAGCAAGAGCAATTTCTGCAAAGGTGGAATACCCGCAGGGAAAACTGTTGCTATGTGGGCATTGAGCCCACCCACCCAAGTCCTCCCATATCCTCCTCCTCTACACTGTCTTCCTCACACGGCAGCAGCAGCGGCGGCGGTGGCTGTGGCTCCACAGACAGCACCACCGGCGTGGCGGCGAAGGTCTCAGGTGAAAAGGAGAACAATCCACCCCAAGCAGGGTTAGAAGTTGGTCAGGGAAGATGTGGGATGGGAATGGAGGATTGGGAGAGTGTGTTGTCTGACTCACCAGGTCAAGATCATTCTATTCTGAAATTGATTATGGGGGACATTGAGGACCCATCTGTGGGATTGACCAAGCTTTTACAGGGTGGAAGTGGTTCTCAGGATGTTGAATTGATTGGAGTGGGTTCTAGTCTGGTGGATCAAAGTTCAGTGCTTGACCCTATTTCTGGTGTCAACTTTGTGAGCAGTAATGACCCTTCTTCTGGTTCTGGGAATTGTTCAGATTTCCCCTTCAATCCCCACCACAATGTTAACTCCAATGTTTCCAGAGTAGGTTCTGGTGTGAATCCTAACCCTGTGTTCCCTGCTTCAGTTAGCAATCTCTTCTCACCAGTTTCACTCCCTCAGGGTGTGTTTCAGCCACAACAACAACAGCATCAGTCAATAGAGTCTCTTGATGAGAAGCTGCAGGTTCTCAATCCCCAGTTCATTTTGAACCAAAACCAAGCACAGTTTATGCCCAACCCTAGCTTGGTCTTGCCTTTGACATATGCCCAGCTGCAGGAACATCAGCTTCACCCTCAGCCTCCGGCGAAACGCCTGAATTGTGGCCCTGCTGGACCAAACTATCAGGTTCCAAAAACACCCTTTTTGGATTCTGGCCAAGAGATGTTTCTTAGGAGGCAGCAGCAGCTTCAACTGCTTCCACACCATCTGCAGCAGAGGCCATCATCCATGGTGGTGTCACCAAAGCAGAAAATTGTGAACCCCAGTGGCAGCGAAGATGTGGCAACCCACCAGCTTCAACAGGCCATAACTGACCAGCTATTCAAGGCTGCAGAGCTGATCGATGCTGGTAATCTGGAACACGCGCACGGGATATTGGCGCGGCTCAATCACCAACTTTCTCCCATTGGGAAGCCTTTTCAGAGGGCTGCTTTTTATTTCAAGGAGGCCTTGCAACTACTTCTGCATTCAAATGCCAACAAAAGTTGCTTGGCCTTCTCACCCACTGGCCTATTGCTCAAGATTGGTGCTTACAAATCATTCTCAGAAATCTCACCAGTTCTGCAGTTTGCTAATTTCACTTGTAACCAAGCACTTCTTGAAGCTGTAGAAGGGTTTGATCGCATTCACATAATTGATTTTGATATTGGGTTTGGTGGACAGTGGTCTTCATTCATGCAAGAATTAGCACTCAGGAATGGTGGTGCACCTGCACTCAAGATCACTGCATTTGCGTCACCCTCCCACCATGATGATATTGAGCTCAGTTTCACTCACGAGAATTTGAAGCAATATGCTGTTGAAATTAACATGTCCTTTGAGCTTGAGATTCTGACACTTGAGTCTTTGAATTCTGCTTCCTGGCCCCAGCCACTTCGTGATTGTGAAGCTGTTGTGGTTAACTTGCCTATTGGCTCTTTCTCAAATTACCCTTCATATCTTCCTTTGGTTCTACGCTTTGTGAAACAGCTTATGCCAAAAATTGTTGTTACATTGGACAGAAGTTGTGATCGAACTGATGCACCATTTCCTCAGCATCTGATTTATGCACTTCAGTCTTATACAGGGCTGCTTGAGTCACTTGATGCTGTTAATGTTCACCCAGATGTCCTTCAGATGATTGAGAAGTATTATCTTCAGCCAGCAATGGAGAAACTTGTTTTGGGTCGTCAGTGTTTGCAGGAAAGAACACTTCCTTGGAAAAACCTGCTCTTGTCATCCGGGTTCTCACCGTTGACATTTAGTAACTTCACAGAGTCTCAAGCAGAGTGTTTGGTGCAGAGGACTCCTGGTAGGGGATTCTATGTGGAGAAGAGGCAGTCTTCCCTTGTTCTATGCTGGCAGAGGAAGGATCTCATCTCAGTCTCAACTTGGAGATGCTGA 2205 0.4735 MKAVPLPFQEYRGKGVLDFSSGVSDSLLVPQQEQFLQRWNTRRENCCYVGIEPTHPSPPISSSSTLSSSHGSSSGGGGCGSTDSTTGVAAKVSGEKENNPPQAGLEVGQGRCGMGMEDWESVLSDSPGQDHSILKLIMGDIEDPSVGLTKLLQGGSGSQDVELIGVGSSLVDQSSVLDPISGVNFVSSNDPSSGSGNCSDFPFNPHHNVNSNVSRVGSGVNPNPVFPASVSNLFSPVSLPQGVFQPQQQQHQSIESLDEKLQVLNPQFILNQNQAQFMPNPSLVLPLTYAQLQEHQLHPQPPAKRLNCGPAGPNYQVPKTPFLDSGQEMFLRRQQQLQLLPHHLQQRPSSMVVSPKQKIVNPSGSEDVATHQLQQAITDQLFKAAELIDAGNLEHAHGILARLNHQLSPIGKPFQRAAFYFKEALQLLLHSNANKSCLAFSPTGLLLKIGAYKSFSEISPVLQFANFTCNQALLEAVEGFDRIHIIDFDIGFGGQWSSFMQELALRNGGAPALKITAFASPSHHDDIELSFTHENLKQYAVEINMSFELEILTLESLNSASWPQPLRDCEAVVVNLPIGSFSNYPSYLPLVLRFVKQLMPKIVVTLDRSCDRTDAPFPQHLIYALQSYTGLLESLDAVNVHPDVLQMIEKYYLQPAMEKLVLGRQCLQERTLPWKNLLLSSGFSPLTFSNFTESQAECLVQRTPGRGFYVEKRQSSLVLCWQRKDLISVSTWRC. 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02722 734 ProSiteProfiles GRAS family profile. 368 733 IPR005202 -
Seca1g02722 734 MobiDBLite consensus disorder prediction 50 110 - -
Seca1g02722 734 MobiDBLite consensus disorder prediction 56 92 - -
Seca1g02722 734 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 341 729 IPR005202 -
Seca1g02722 734 Pfam GRAS domain family 378 733 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02722 Seca-Chr1 75367585 75369789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02722 376 734 GRAS Transcription Factor Family AT4G00150 59.669 1.27e-140 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca1g02722 GRAS 1.1e-89 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02722 - - gmx:100805945 1117.83