Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02713 ATGGATTCAAATTCCCGTTATCAACTACAACAGCAACAAATCAATTGTGGTTCATTTCCCTTTCAGTCTGTTAAACAAACAGGTGAAGGTCAAGGTGCTGCTAATAACCCCTGGGTTATGGATTCTGAACCAGAGAGGTTAGTTTTGAGATTCATGAATTCCGGTAATAGCAACAACGATTCGCCTTCGCCTAGTTTGCGAGAATTCATGGACAAGCCTTTAGCCAACGAGTCATCATCATCGGTTCTGAGACTCATCAATTGCCAGCAGAGTTATGCTACTTCTTCTGCTGGTCATTTCTCCTTTCAGAACGGGTATGATTCTATGAAAGGTTTTGGAGATTACAGTGGTGTGAATGAAATTGATGGTGAACTTAGTCTATCTATGAACCAAATTAGTTTCTCATCAAGAAGACCTTCATCCTTGGGAATGTTATCACAGATCTCCAAAATGGGGAATGAGGTAATAACTCATGAGAGGAGACAGGGAAGTGGCAAGGGCGATGCTGGATATTATTATAGTCCTGGATTCCCTTATGGTTCTTGTAAGGAGATATCACATCACTCAGATAAACTCATAGGCAAGAAAAGAGAGCAAAATAGTAATCATAAGTTGTTTTTTGATCCTCAGAATGGAGAAGTAGCAAACCAAGTTTATACATTATCGAATCACTTGAGTTTGCCAAGCACTTCATCCGAGATGTTTTCTGTGGAGAATATGGTTCAGTTCCAAGAAGATATTGTTCCTTGTAAAATCAGAGCAAAGAGAGGCTTCGCTACTCATCCTCGAAGCATTGCCGAAAGGGTGAGAAGAACTCGGATCAATGAACGAATGAGGAAATTGCAAGAACACGTTCCAAACATGGAGAAGCAAACTAGCACAGCAGACATGTTGGACTTGGCTATAGAGTACATCAAAGATCTTCAGAACGAATTCAAGACTCTGAATGAAAAACGAGAAAAATGCAAATGTATAAGGAAGTCACAAACAAATCAAATTGCTTGA 1005 0.398 MDSNSRYQLQQQQINCGSFPFQSVKQTGEGQGAANNPWVMDSEPERLVLRFMNSGNSNNDSPSPSLREFMDKPLANESSSSVLRLINCQQSYATSSAGHFSFQNGYDSMKGFGDYSGVNEIDGELSLSMNQISFSSRRPSSLGMLSQISKMGNEVITHERRQGSGKGDAGYYYSPGFPYGSCKEISHHSDKLIGKKREQNSNHKLFFDPQNGEVANQVYTLSNHLSLPSTSSEMFSVENMVQFQEDIVPCKIRAKRGFATHPRSIAERVRRTRINERMRKLQEHVPNMEKQTSTADMLDLAIEYIKDLQNEFKTLNEKREKCKCIRKSQTNQIA. 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02713 334 Gene3D - 260 332 IPR036638 GO:0046983
Seca1g02713 334 SMART finulus 264 314 IPR011598 GO:0046983
Seca1g02713 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 258 308 IPR011598 GO:0046983
Seca1g02713 334 FunFam Transcription factor bHLH130 family 259 328 - -
Seca1g02713 334 Coils Coil 271 291 - -
Seca1g02713 334 Pfam Helix-loop-helix DNA-binding domain 264 309 IPR011598 GO:0046983
Seca1g02713 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 261 323 IPR036638 GO:0046983
Seca1g02713 334 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 83 324 - -
Seca1g02713 334 Coils Coil 298 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02713 Seca-Chr1 74695009 74698327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02713 93 314 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 50.877 3.20e-53 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca1g02713 HLH 3.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02713 - - gmx:100796534 332.798