Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02709 ATGGAGAAGCATAAGTGTAAGCTCTGCTATAGAAGCTTCTCGAATGGGAGAGCTTTAGGGGGTCACATGAGATCTCATATGATGAACCTTTCTCTTGCAAAGCCAGAAGAAGAGTCATCACGAACCCAACTCAGTTTTGAAGCTGAATCAGCTCCATCATCATCAGAAGATGAAGGTGGTGATGATGAAAAGGGTCTCTCTTATGGTCTCAGAGAGAATCCAAAGAGAAGCATTCGCCTTGTAGATCCTGAGTTTTCTTTTGTAGCTGCAGACACTGGTGGGTCTGTGATTCTTCAAGAGGACAGAGAAAGCGAAACAGAGTCATCAAAGAACAACCCAACTCGTAGAAGATCCAAAAGGGCATGGAAACTAGGTGGCTTCGATTACAAGCACTATCATTACAATAAGCATGTTGAAATGAAGAAGGTAAAATTCTGCAAAACTAATAACAACAACAACACAGAATCATGGGTCGATCACGAACCTGCAAGTTCGGTTTCTGATGCAACAACCGAAGAAGACGTTGCATTTTGTCTCATGATGCTGTCTAGGGACAAATGGAAGAGACACAAGGATCAGCAACAACTATTGGTGGATGATCAATATGAAGATGACGATGAAGAGGAAGAAGAAGAGGATGAAGAAGAAGAGGAAGATGAAGATGAAGGTGAGAGATCCTTGGATGATAGTGATGAATCCCAAGAATTGATGAAAATGTCCAAGAACCGTGTAAGAAAAGGAAGGTACAAATGTGAGACCTGCAACAAAGAGTTTCGATCTTATCAAGCATTGGGTGGTCACAGAGCGAGTCACAAGAAGATCAAAGCCAACGTAACAGTGGTGGAAGAACCAGAATCTGAGCGTGGGAATTGTGGAACTTTTGCCCCTACGGTGGTGGAAAAGAAAATCCATGAGTGCGCAGTTTGTTACAGAGTGTTTGCTTCCGGTCAAGCACTTGGTGGACACAAGAGAACCCATGTTACTGGGTCCACAACAATCCAAGTTCCATGTTCCTCAAAGTTTGGAAACAGTTTAATAGATCTTAACCTCCCTGCTCCAATTGAGGATGATGACATTAGCCACATAGAGAACTCTGCTGTTTCAGATGCAGAATTTCTCAAAACCCGTTAG 1131 0.4279 MEKHKCKLCYRSFSNGRALGGHMRSHMMNLSLAKPEEESSRTQLSFEAESAPSSSEDEGGDDEKGLSYGLRENPKRSIRLVDPEFSFVAADTGGSVILQEDRESETESSKNNPTRRRSKRAWKLGGFDYKHYHYNKHVEMKKVKFCKTNNNNNTESWVDHEPASSVSDATTEEDVAFCLMMLSRDKWKRHKDQQQLLVDDQYEDDDEEEEEEDEEEEEDEDEGERSLDDSDESQELMKMSKNRVRKGRYKCETCNKEFRSYQALGGHRASHKKIKANVTVVEEPESERGNCGTFAPTVVEKKIHECAVCYRVFASGQALGGHKRTHVTGSTTIQVPCSSKFGNSLIDLNLPAPIEDDDISHIENSAVSDAEFLKTR. 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02709 376 SUPERFAMILY beta-beta-alpha zinc fingers 3 271 IPR036236 -
Seca1g02709 376 ProSiteProfiles Zinc finger C2H2 type domain profile. 304 331 IPR013087 -
Seca1g02709 376 SUPERFAMILY beta-beta-alpha zinc fingers 300 328 IPR036236 -
Seca1g02709 376 Coils Coil 198 218 - -
Seca1g02709 376 MobiDBLite consensus disorder prediction 98 114 - -
Seca1g02709 376 ProSitePatterns Zinc finger C2H2 type domain signature. 251 271 IPR013087 -
Seca1g02709 376 MobiDBLite consensus disorder prediction 190 239 - -
Seca1g02709 376 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Seca1g02709 376 MobiDBLite consensus disorder prediction 199 229 - -
Seca1g02709 376 MobiDBLite consensus disorder prediction 35 52 - -
Seca1g02709 376 ProSiteProfiles Zinc finger C2H2 type domain profile. 249 276 IPR013087 -
Seca1g02709 376 MobiDBLite consensus disorder prediction 57 72 - -
Seca1g02709 376 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 26 IPR013087 -
Seca1g02709 376 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 374 IPR044303 GO:0006355
Seca1g02709 376 SMART c2h2final6 4 26 IPR013087 -
Seca1g02709 376 SMART c2h2final6 249 271 IPR013087 -
Seca1g02709 376 SMART c2h2final6 304 326 IPR013087 -
Seca1g02709 376 Gene3D Classic Zinc Finger 246 326 - -
Seca1g02709 376 ProSitePatterns Zinc finger C2H2 type domain signature. 306 326 IPR013087 -
Seca1g02709 376 MobiDBLite consensus disorder prediction 96 118 - -
Seca1g02709 376 MobiDBLite consensus disorder prediction 33 72 - -
Seca1g02709 376 Pfam C2H2-type zinc finger 4 27 - -
Seca1g02709 376 Pfam C2H2-type zinc finger 248 273 - -
Seca1g02709 376 Pfam C2H2-type zinc finger 304 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02709 Seca-Chr1 74331537 74332667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02709 1 362 C2H2 Transcription Factor Family AT3G60580 42.432 1.71e-68 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca1g02709 zf-C2H2_6 1e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02709 - - vra:106780254 438.343