Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02701 ATGGCTCTTACACTTCATACTGCATTCTCTCATCTACTCATCCTTGTAGCTTTACTCTCAATATTCCTAGTAATCCCTTCCTCTAGTTTCAACCCCAGAAAGCTTGTTAATTATTCCAATTCCTCATATTCTGGTGGTTCAGATTGGTCACCTGCAGTGGCCACTTGGTATGGACCTGCCAATGGTGACGGAAGTGAAGGTGGTGCTTGTGGATATGGCACTGCTGTTGGACAACCTCCATTCTCATCATTGATATCAGCCGGAAGCCCTCTTATATATGACTCAGGCAAAGGTTGCGGTTCTTGTTATGAGGTAAAGTGCACAGGGAATTCTGTTTGCTCAGGCAAACCTGTGAGGGTAGTCATCACTGATGAGTGTGATGGGTGTGGCTCTGATGCTCAATATCATTTTGATTTGAGTGGCAGTGCTTTTGGTTCCATGGCAGTTTCAGGTCAAGATGAAGAGCTACGCAATGCTGGCAAAATAGACATTCAACATAGAAGAGTTGAATGCAACTATCCTGGTATATCAATAGCATTCCACGTGGACTCTGGATCCAACCAACAATATTTTGCTACCTTGGTTGAATATGAGGATGGGGATGGTGACCTTGCGAAAGTAGAACTGAAGGAAGCACTTGACTCAGCCTCATGGTATTCCATGGATCAATCATGGGGTGCAGTTTGGAAATTTGATAAAGGGGCACCACTGAAAGCACCATTCTCAATTAGACTAACCACACTTGAGTCTGGGAAGACTATTGTGGCCAACAATGTGATCCCTGCAGGTTGGACACCTGGTCAAACTTACAGATCAATTGTGAATTTCGATACCTAA 837 0.4409 MALTLHTAFSHLLILVALLSIFLVIPSSSFNPRKLVNYSNSSYSGGSDWSPAVATWYGPANGDGSEGGACGYGTAVGQPPFSSLISAGSPLIYDSGKGCGSCYEVKCTGNSVCSGKPVRVVITDECDGCGSDAQYHFDLSGSAFGSMAVSGQDEELRNAGKIDIQHRRVECNYPGISIAFHVDSGSNQQYFATLVEYEDGDGDLAKVELKEALDSASWYSMDQSWGAVWKFDKGAPLKAPFSIRLTTLESGKTIVANNVIPAGWTPGQTYRSIVNFDT. 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02701 278 CDD DPBB_EXPB_N 49 171 - -
Seca1g02701 278 PRINTS Expansin/Lol pI family signature 159 175 IPR007118 GO:0005576
Seca1g02701 278 PRINTS Expansin/Lol pI family signature 218 232 IPR007118 GO:0005576
Seca1g02701 278 PRINTS Expansin/Lol pI family signature 48 63 IPR007118 GO:0005576
Seca1g02701 278 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Seca1g02701 278 PRINTS Expansin/Lol pI family signature 258 272 IPR007118 GO:0005576
Seca1g02701 278 PRINTS Expansin/Lol pI family signature 89 107 IPR007118 GO:0005576
Seca1g02701 278 Pfam Expansin C-terminal domain 178 261 IPR007117 -
Seca1g02701 278 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 67 176 IPR007112 -
Seca1g02701 278 PRINTS Major pollen allergen Lol pI signature 126 141 IPR005795 GO:0005576|GO:0019953
Seca1g02701 278 PRINTS Major pollen allergen Lol pI signature 180 195 IPR005795 GO:0005576|GO:0019953
Seca1g02701 278 PRINTS Major pollen allergen Lol pI signature 87 98 IPR005795 GO:0005576|GO:0019953
Seca1g02701 278 PRINTS Major pollen allergen Lol pI signature 148 163 IPR005795 GO:0005576|GO:0019953
Seca1g02701 278 PRINTS Major pollen allergen Lol pI signature 196 211 IPR005795 GO:0005576|GO:0019953
Seca1g02701 278 PRINTS Major pollen allergen Lol pI signature 227 244 IPR005795 GO:0005576|GO:0019953
Seca1g02701 278 Pfam Lytic transglycolase 86 165 IPR009009 -
Seca1g02701 278 SUPERFAMILY Barwin-like endoglucanases 43 175 IPR036908 -
Seca1g02701 278 Gene3D - 174 276 IPR036749 -
Seca1g02701 278 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 189 272 IPR007117 -
Seca1g02701 278 PANTHER EXPANSIN-B3 19 276 - -
Seca1g02701 278 SUPERFAMILY PHL pollen allergen 178 272 IPR036749 -
Seca1g02701 278 Gene3D - 32 172 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02701 Seca-Chr1 73577743 73580754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02701 30 276 Expansin Gene Family AT1G65680 60.324 5.75e-109 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02701 - - gmx:548090 489.574