Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02690 ATGAGTCAGTGTGTTCCCAGCTGGGATGTCGACGACAACAACACACCACCCCCCAGACTCTCTCTTCGTTCCAACTCCAATTCAACTGCCCCTGATGTCCCCATGCTAGACTATGATATTGCAGAACTGACATGGGAAAATGGACAACTTTCCATGCATGGCTTAGGGCTACCGCGAGTGCCGGTAAAACCCGCCACCACTACCCCTTCCAATAAGGATACATGGGAAAAGCCTCGTGCAAGTGGCACCTTAGAGTCTATTGTAAACCAAGCCACTAGCTTACCCAACCACCGGGGCAAATCGTCATCTTTTGTTGCCGCCGGCGGTGGTGTGTATGGGAACGTGTTAGTCCCATGGCTGGACCCTCACCGTGCTGCGGCTATCGCCGCCGCGGCAGCTTCGAACACCGTCACCATGGATGCGTTGGTGCCGTGTTCGAATCGGACGGAGGAGCAGAGTACGCAGGTCATGGATTCCATCCCCGGAGGACTTGGCACGTGCATGGTTGGTTGTTCCACACGTGTGGGGTCTTGTAGCGGTACGCAGGAGGAAGGGGCGTTACTTGCGGAGGCGGCAAAGCGTGCGAGGGTGGCACACGTGCCGGTGAGTAGCAAGGATCAGAGTGTGAGTGGAAGCAGGCACGTGACACTTGACACGTGTGACAGGGAATTTGGAGTGGGTTTCACTTCCACCTCCATAGGGTCGTTGGAAAATACAAGCTCAGCAAAGCAGTGCACTAAGACCACCACTGTTGATGACCATGATTCTGTTTGCCATAGTAGACCAATGAAGAGAGATGATGAGGAGGAGGAGAAAAAGAGGGGAAATCGAAAATCTTCTGTGTCTACTAAAAGGAGCAGAGCTGCAGCAATACACAACCAATCTGAAAGGAAAAGGAGGGATAAGATAAACCAAAGAATGAAGACATTGCAAAAGTTGGTCCCAAATTCCAGCAAGACTGATAAAGCTTCAATGTTGGATGAAGTGATAGAATATCTGAAACAGTTGCAAGCACAAGTGCAGATGATGAATAGAATCAACATGTCATCCATGATGCTGCCAATGACCATGCAACAACAACTTCAAATGTCTATGATGGCTCCAATGGGCATGGGGATGGGGATGGGTATGGGTATGGGGATGGGAATGGGGATGGATATGAACACTATGAATAGAGCTAATATCCCTGGCATGCCTCCGGTCCTCCACCCTTCTGCCTTCATGCCTATGGCCTCGTGGGATGCCGCCGGCGGTGACCGGCTTCAAGGGCCTCCGGCCAACGTGATGGCTGACCCACTCTCCACATTTTTTGGATGCCAATCACAGCCCATGACCATGGATGCCTACAGTAGGATTGCTGCCATGTATCAGCAGCTCCATCAGCCTCCACCTTCTGGTTCTAAGAGTTGA 1410 0.5163 MSQCVPSWDVDDNNTPPPRLSLRSNSNSTAPDVPMLDYDIAELTWENGQLSMHGLGLPRVPVKPATTTPSNKDTWEKPRASGTLESIVNQATSLPNHRGKSSSFVAAGGGVYGNVLVPWLDPHRAAAIAAAAASNTVTMDALVPCSNRTEEQSTQVMDSIPGGLGTCMVGCSTRVGSCSGTQEEGALLAEAAKRARVAHVPVSSKDQSVSGSRHVTLDTCDREFGVGFTSTSIGSLENTSSAKQCTKTTTVDDHDSVCHSRPMKRDDEEEEKKRGNRKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQMMNRINMSSMMLPMTMQQQLQMSMMAPMGMGMGMGMGMGMGMGMDMNTMNRANIPGMPPVLHPSAFMPMASWDAAGGDRLQGPPANVMADPLSTFFGCQSQPMTMDAYSRIAAMYQQLHQPPPSGSKS. 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02690 469 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 41 466 IPR031066 -
Seca1g02690 469 CDD bHLH_AtPIF_like 287 348 IPR047265 -
Seca1g02690 469 SMART finulus 293 342 IPR011598 GO:0046983
Seca1g02690 469 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 287 336 IPR011598 GO:0046983
Seca1g02690 469 Coils Coil 293 313 - -
Seca1g02690 469 FunFam transcription factor UNE10 isoform X1 282 347 - -
Seca1g02690 469 MobiDBLite consensus disorder prediction 1 28 - -
Seca1g02690 469 MobiDBLite consensus disorder prediction 248 277 - -
Seca1g02690 469 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 285 349 IPR036638 GO:0046983
Seca1g02690 469 Pfam Helix-loop-helix DNA-binding domain 292 337 IPR011598 GO:0046983
Seca1g02690 469 Gene3D - 282 348 IPR036638 GO:0046983
Seca1g02690 469 MobiDBLite consensus disorder prediction 238 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02690 Seca-Chr1 73016045 73022111 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02690 1 450 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 50.655 1.55e-107 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca1g02690 HLH 7.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02690 - - gmx:100798775 633.639