Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02685 ATGGGGGAAGCTCAGGGTAGTTCCAATTCCCTGCCTCCTTTCCTCGCCAAGACTTATGAGATGGTGGATGATCCTTCCACTAATAGCATTGTTTCATGGAGTGCCTCCAAGAGTTTCATTGTTTGGAATCCACCAGAATTTGCAAGGGATTTGTTGCCTAAATTCTTTAAGCACAATAACTTCTCAAGTTTTATCAAACAGCTCAACACTTATGGCTTTAGAAAGATTGACCCTGAACAATGGGAATTTGCAAATGAAGATTTTGTTAGAGGTCAACCACATCTTTTGAAGAATATTCATAGGCGCAAACCAGTTCATAGCCATTCTTTGCAGAATCTCCAAGGGGCTGGTCCACTACCAGAATCTGAACGGCAGAGTTTGAAAGGTGAGATAAAGAAGCTTAAATTGATTAAATTGACTCCAAAGAGAGCTAAGAGCATCTCCATCACCCGTTCTAATTGCAAATTGCTATTCTCTGCAGCATCGATGTTGCACCGTTGGAGAGATGCAAGGGTCAGTTTTTTTTCATTTGGGCGATGCCCACTGCAGCAACCGCAAAAGCAGTTACTGCAGATTTTTTAA 582 0.4175 MGEAQGSSNSLPPFLAKTYEMVDDPSTNSIVSWSASKSFIVWNPPEFARDLLPKFFKHNNFSSFIKQLNTYGFRKIDPEQWEFANEDFVRGQPHLLKNIHRRKPVHSHSLQNLQGAGPLPESERQSLKGEIKKLKLIKLTPKRAKSISITRSNCKLLFSAASMLHRWRDARVSFFSFGRCPLQQPQKQLLQIF. 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02685 193 SMART hsfneu3 10 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca1g02685 193 PRINTS Heat shock factor (HSF) domain signature 51 63 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca1g02685 193 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca1g02685 193 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca1g02685 193 FunFam Heat shock transcription factor 1 7 103 - -
Seca1g02685 193 Pfam HSF-type DNA-binding 14 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca1g02685 193 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 135 IPR027725 -
Seca1g02685 193 Gene3D - 6 103 IPR036388 -
Seca1g02685 193 SUPERFAMILY "Winged helix" DNA-binding domain 9 102 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02685 Seca-Chr1 72041698 72042407 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02685 7 134 HSF AT4G18880 78.462 5.75e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Seca1g02685 HSF_DNA-bind 1.1e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02685 K09419 - rcu:8275192 243.817