Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02678 ATGTTGGAGTACGTATGGGGTAATCCATCGAAAATAACCCTCACCGGAAATGAAGGCGCCGCCGCCACAGAACCCGGCCAAACCCACCGGCAAACCCTCAACCACAACCACACCTTGTTACCTAACCACCTGCTATCTCAACCCCAACCGCAACATGCTCCTACACCCACTGCCACTAGTTTCTCTCACCAAAACCACTTCAACCCGCCAGAACTGCACCATCACCAGCACCACCCCTGTGACCCACGCGCTTTCACTGGCGCGTCCCCTACCTCTTTCTCACCGCCACCATCCTCCCTCTACCCAATCCCACCCCTCAACGCGGCCCACTACAGGCCTGAGCCTGATCCCGGGCTTCTTAGTCGGCCTATAGACTTCATGGGCTCTAGGCTTGGGCTTAATCTTGGTGGCCGCATCTACTTTGCATCTTCTAACGATGACATCCCTAATCGACTCTACCGTCCGTATAAGTCATCCGTAGAGGTGAGTTGCACGGTGTCATCGAACTCGCCGCGGTGCCAGGCGGAAGGTTGCAACGCGGACCTCTCCGACGCGAAGCATTATCACCGCCGCCATAAGGTGTGCGAGTTCCACTCGAAGGCCGCCATTGTGATCGCTGCCGGGTTGACTCAGCGATTCTGCCAGCAGTGTAGCAGGTTCCATCTTCTTTCAGAATTTGATAATGGAAAACGTAGCTGCAGGAAGAGACTAGCAGATCATAATCGTCGCAGAAGAAAATTACAGCAGCCAACTCAAGAAATACAGAAATCTCAGCCTACTTTTGATAATGTTGCAAGTACAACCTCTTCTTAA 813 0.5326 MLEYVWGNPSKITLTGNEGAAATEPGQTHRQTLNHNHTLLPNHLLSQPQPQHAPTPTATSFSHQNHFNPPELHHHQHHPCDPRAFTGASPTSFSPPPSSLYPIPPLNAAHYRPEPDPGLLSRPIDFMGSRLGLNLGGRIYFASSNDDIPNRLYRPYKSSVEVSCTVSSNSPRCQAEGCNADLSDAKHYHRRHKVCEFHSKAAIVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKLQQPTQEIQKSQPTFDNVASTTSS. 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02678 270 MobiDBLite consensus disorder prediction 41 67 - -
Seca1g02678 270 SUPERFAMILY SBT domain 171 250 IPR036893 GO:0003677|GO:0005634
Seca1g02678 270 MobiDBLite consensus disorder prediction 240 270 - -
Seca1g02678 270 FunFam Squamosa promoter-binding-like protein 14 164 234 - -
Seca1g02678 270 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 161 251 IPR044817 GO:0003677
Seca1g02678 270 Gene3D - 168 234 IPR036893 GO:0003677|GO:0005634
Seca1g02678 270 Pfam SBP domain 173 246 IPR004333 GO:0003677
Seca1g02678 270 MobiDBLite consensus disorder prediction 251 270 - -
Seca1g02678 270 ProSiteProfiles Zinc finger SBP-type profile. 170 247 IPR004333 GO:0003677
Seca1g02678 270 MobiDBLite consensus disorder prediction 41 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02678 Seca-Chr1 71922551 71924804 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02678 1 220 SBP-box Gene Family AT1G02065 41.525 4.42e-46 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Seca1g02678 SBP 3.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02678 - - gmx:100778566 325.865