Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02677 ATGGATTTTGGAGGGAACATGTTCTGTCTCAGCAACAGTAACGTTAACAGTAACAGTAACGGTAACAGTAACAGTTTCCCTTGGGATTCATGGGAAACCGTCACGTCTAACAGTTCTAGTAGGCTCATCAACGCATTCCACACCACCGCCGTTACGGCTGAAACCTCCGCCGTTAACCGTCACGAGGCTGGTCTAGCCAACGCTCTCATGTTTCTCCCTCAAGCTAATAATCCTGTAACCCAAAACGATGGCGGCGTTCAACGATATCGCCACCGCCAGAGCCACCAGCAGTCGGCGTCGTCTTACGGCGGAGATGGGTCACACGTGCAGCCGGACCCGCATCTGACGTGCTTGAAGCTTGGGAAGAGGCATTACTTTGAGGATGCAGGTGGAAGTGGAAGCGGTGGGTTGGGTTTGACGGATAAGAGAGGGAAAGGGTATTATGGCGGTGGTGGAGTGAAAACGACGGCGTTCGCGGCGGGTACGGTGCCGAGGTGTCAGGTGGAGGGGTGCCACGTGGCACTTTTGAACGCGAAGGACTATCACAGGAGGCACAAGGTTTGTGAGATGCATTCCAAGGCACCAAAAGTTGTGGTGTTAGGGATGGAGCAGAGATTCTGTCAGCAGTGCAGCAGGTTTCATGTGGTGTCAGAGTTTGATGATTCAAAGAGGAGTTGTAGGAGGAGATTGGCAGGTCACAATGAGCGAAGAAGAAAGAGCTCCCATGATTCTGTTGCAAGGAATGCTTCACAAGCAGGAGGGTGTGCTCTCTCTCTTCTGTCATCTAGGAGTGATTCTTGGCTTTCTCCTGCTGATCTCTCCATAAGATGCAGTGCTGCATTGCGTGAATTGATAGCTGAAAACAGGGCTGCCATCATGGCTAGGCAGTTTGTTTCAGATAGAGACTGGAATTTGCACCACCATGCAATGGAAGACTTGAAGGAGATCCAACCTGAGTCCAATTATTTCCCACAACAGATGTTTCCACAGACACAGTAA 999 0.5085 MDFGGNMFCLSNSNVNSNSNGNSNSFPWDSWETVTSNSSSRLINAFHTTAVTAETSAVNRHEAGLANALMFLPQANNPVTQNDGGVQRYRHRQSHQQSASSYGGDGSHVQPDPHLTCLKLGKRHYFEDAGGSGSGGLGLTDKRGKGYYGGGGVKTTAFAAGTVPRCQVEGCHVALLNAKDYHRRHKVCEMHSKAPKVVVLGMEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHDSVARNASQAGGCALSLLSSRSDSWLSPADLSIRCSAALRELIAENRAAIMARQFVSDRDWNLHHHAMEDLKEIQPESNYFPQQMFPQTQ. 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02677 332 Gene3D - 159 227 IPR036893 GO:0003677|GO:0005634
Seca1g02677 332 ProSiteProfiles Zinc finger SBP-type profile. 163 240 IPR004333 GO:0003677
Seca1g02677 332 SUPERFAMILY SBT domain 164 245 IPR036893 GO:0003677|GO:0005634
Seca1g02677 332 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 93 276 IPR044817 GO:0003677
Seca1g02677 332 MobiDBLite consensus disorder prediction 81 111 - -
Seca1g02677 332 FunFam Squamosa promoter-binding-like protein 14 158 227 - -
Seca1g02677 332 MobiDBLite consensus disorder prediction 81 105 - -
Seca1g02677 332 Pfam SBP domain 166 239 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02677 Seca-Chr1 71885273 71889865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02677 112 239 SBP-box Gene Family AT5G43270 55.814 1.63e-38 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Seca1g02677 SBP 1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02677 - - gmx:100806582 467.618