Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02674 ATGGGTAGTGCTTTCAAAAATAAGGGGGTACAGCCACTCCTGGATGGTGTAATTAATTATTTGCCATGCCCAATTGAAGTTAGTAATTATGCACTTGACCAAACTAAGAATGAGGAGAAGGTTGAGTTGCCTGGAAGTCCTGATGGGCCACTTGTGGCACTGGCTTTCAAGTTGGAGGAAGGACGGTTTGGTCAGTTAACATATCTAAGAATCTATGAGGGTGTCATTCGAAAGGGTGATTTTATTATTAATGTAAACACAGGCAAGAAGATCAAGGTTCCTCGCTTGGTTCGAATGCATTCTGATGAGATGGAGGACATTCAAGAGGCTCATGCTGGTCAGATAGTTGCAGTATTTGGTGTTGATTGTGCATCAGGAGATACTTTTACTGATGGGTCAGTTAGATACACAATGACTTCAATGAATGTTCCTGAGCCAGTGATGTCATTAGCTGTACAGCCAGTCTCAAAAGATTCTGGAGGGCAATTTTCAAAAGCTTTGAATCGCTTCCAAAAAGAGGATCCTACTTTCCGAGTTGGCTTGGACCCAGAGAGTGGGCAGACAATCATTTCTGGAATGGGGGAACTGCATTTAGATATCTATGTTGAACGCATTAGGAGAGAGTACAAGGTTGATGCTTCAGTTGGAAAGCCCCGTGTAAACTTCAGAGAAACTGTTACTCAACGTGCTGATTTTGATTATTTGCATAAGAAGCAAACTGGAGGGCAAGGACAATATGGTCGAGTAATTGGTAAAGACTTGTCATGTGATGCTTTTGTAGATACATTTGTTTCTCATTTCATGAGGTATATTGAACCACTTCCTGCAGGGTCACCAACTAAGTTTGAATTTGAAAACATGCTTGTTGGTCAAGCTATTCCATCTAATTTTATCCCTGCAATTGAAAAGGGTTTCAAAGAGGCTGCCAACTCCGGTGCCTTAATTGGACATCCAGTTGAAAACCTCCGAGTTGTCTTGACAGATGGTGCTGCCCATGCTGTTGATTCCAGTGAACTTGCATTTAAATTGGCCTCCATCTATGCTTTTAGACAGTGTTATGCAGCTTCCAGACCAGTTATATTAGAACCTGTTATGCTTGTTGAGCTGAAAGTACCAACAGAATTTCAGGGAGCTGTTGCTGGTGACATCAACAAGAGAAAAGGTGTGATTGTTGGCAATGATCAGGAAGGAGATGATTCTGTCATTACTGCTCATGTAAGTACCTAA 1227 0.4173 MGSAFKNKGVQPLLDGVINYLPCPIEVSNYALDQTKNEEKVELPGSPDGPLVALAFKLEEGRFGQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSDEMEDIQEAHAGQIVAVFGVDCASGDTFTDGSVRYTMTSMNVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDPESGQTIISGMGELHLDIYVERIRREYKVDASVGKPRVNFRETVTQRADFDYLHKKQTGGQGQYGRVIGKDLSCDAFVDTFVSHFMRYIEPLPAGSPTKFEFENMLVGQAIPSNFIPAIEKGFKEAANSGALIGHPVENLRVVLTDGAAHAVDSSELAFKLASIYAFRQCYAASRPVILEPVMLVELKVPTEFQGAVAGDINKRKGVIVGNDQEGDDSVITAHVST. 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02674 408 SMART EFG_C_a 359 408 IPR000640 -
Seca1g02674 408 Gene3D - 363 407 - -
Seca1g02674 408 Pfam Elongation factor G, domain IV 218 251 IPR005517 GO:0005525
Seca1g02674 408 Pfam Elongation factor G, domain IV 266 356 IPR005517 GO:0005525
Seca1g02674 408 SUPERFAMILY Translation proteins 6 141 IPR009000 -
Seca1g02674 408 SUPERFAMILY EF-G C-terminal domain-like 141 218 IPR035647 -
Seca1g02674 408 Gene3D - 224 362 IPR014721 -
Seca1g02674 408 SUPERFAMILY Ribosomal protein S5 domain 2-like 218 358 IPR020568 -
Seca1g02674 408 Pfam Elongation Factor G, domain III 143 217 IPR041095 -
Seca1g02674 408 Gene3D Elongation Factor G (Translational Gtpase), domain 3 150 223 - -
Seca1g02674 408 PANTHER ELONGATION FACTOR G, MITOCHONDRIAL 1 407 - -
Seca1g02674 408 Gene3D Translation factors 35 149 - -
Seca1g02674 408 Gene3D - 1 34 IPR027417 -
Seca1g02674 408 CDD EFG_III 144 219 IPR009022 -
Seca1g02674 408 SMART EFG_IV_2 219 357 IPR005517 GO:0005525
Seca1g02674 408 CDD EFG_mtEFG1_IV 222 355 IPR005517 GO:0005525
Seca1g02674 408 FunFam Elongation factor G, mitochondrial 33 146 - -
Seca1g02674 408 Pfam Elongation factor G C-terminus 360 406 IPR000640 -
Seca1g02674 408 CDD mtEFG1_II_like 51 131 - -
Seca1g02674 408 SUPERFAMILY EF-G C-terminal domain-like 359 406 IPR035647 -
Seca1g02674 408 Pfam Elongation factor Tu domain 2 64 130 IPR004161 GO:0005525
Seca1g02674 408 FunFam Elongation factor G 147 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02674 Seca-Chr1 71644495 71656152 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02674 13 388 Eukaryotic Initiation Factors Gene Family AT1G56070 24.324 1.45e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02674 K02355 - gmx:100783315 743.036