Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02673 ATGGCACGCTTCTCCAGGTCCTCCGCGCCACGGCTCCTCTACGCACTCTACTCCTCACCGTCGCGGGCGGCATCCCTCCTCGGCGGCGCTTTCCACCTGCGGCATTTATCGGCGGGGAACGTGGCGCGCGCGAAGGCGGCGGCGGAGAAGGAGCCGTGGTGGAAAGAGTCAATGGAGCGGCTACGCAACATCGGGATCTCGGCGCACATCGACTCTGGAAAAACGACGCTGACGGAGCGGGTTCTGTACTACACGGGTCGGATCCACGAGATCCATGAGGTTAGGGGCAGGGATGGCGTCGGCGCTAAGATGGACTCCATGGATTTGGAGAGGGAAAAGGGAATCACTATTCAGTCTGCCGCCACTTATTGCACTTGGAAAGACTATAAGGTCAACATAATTGACACACCTGGTCATGTTGATTTCACCATTGAGGTCGAGAGGGCTTTGCGTGTCCTTGACGGTGCCATCCTTGTTCTTTGTAGTGTTGGTGGGGTGCAAAGTCAGTCCATTACTGTTGATCGGCAAATGAGAAGATATGAGGTTCCAAGACTTGCATTTATCAACAAGCTTGATCGGATGGGAGCAGATCCATGGAAAGTTTTAAATCAGGCTAGATCTAAGCTTCGGCATCATAGTGCTGCAATTCAAGTTCCAATAGGTTTGGAAGATGATTTTAAGGGACTTGTTGATCTTGTGCAGTTAAAGGCCTACTATTTTCATGGTTCAAATGGTGAAAAAGTTGTCACTGAAGAAGTGCCTGCAGATATGGAAGCATTGGTGGCAGAAAAAAGACGTGAACTAATAGAAACTGTGTCAGAGGTTGATGATATACTTGCCGAAGCTTTTCTTGGTGATGAGACCATAACAGCTGCTGACCTTGAGGTATGTAGGCAACAGTTGCTTTTGTCCTGA 915 0.5027 MARFSRSSAPRLLYALYSSPSRAASLLGGAFHLRHLSAGNVARAKAAAEKEPWWKESMERLRNIGISAHIDSGKTTLTERVLYYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATYCTWKDYKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLNQARSKLRHHSAAIQVPIGLEDDFKGLVDLVQLKAYYFHGSNGEKVVTEEVPADMEALVAEKRRELIETVSEVDDILAEAFLGDETITAADLEVCRQQLLLS. 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02673 304 Gene3D - 53 304 IPR027417 -
Seca1g02673 304 PANTHER ELONGATION FACTOR G, MITOCHONDRIAL 36 299 - -
Seca1g02673 304 FunFam Ribosome-releasing factor 2, mitochondrial 55 302 - -
Seca1g02673 304 NCBIfam small GTP-binding protein domain 61 233 IPR005225 GO:0005525
Seca1g02673 304 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 59 269 IPR000795 GO:0003924|GO:0005525
Seca1g02673 304 PRINTS GTP-binding elongation factor signature 184 193 IPR000795 GO:0003924|GO:0005525
Seca1g02673 304 PRINTS GTP-binding elongation factor signature 132 142 IPR000795 GO:0003924|GO:0005525
Seca1g02673 304 PRINTS GTP-binding elongation factor signature 112 120 IPR000795 GO:0003924|GO:0005525
Seca1g02673 304 PRINTS GTP-binding elongation factor signature 148 159 IPR000795 GO:0003924|GO:0005525
Seca1g02673 304 PRINTS GTP-binding elongation factor signature 63 76 IPR000795 GO:0003924|GO:0005525
Seca1g02673 304 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 295 IPR027417 -
Seca1g02673 304 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 105 120 IPR031157 -
Seca1g02673 304 CDD EF-G 63 294 - -
Seca1g02673 304 Pfam Elongation factor Tu GTP binding domain 60 231 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02673 Seca-Chr1 71623203 71625618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02673 60 194 Eukaryotic Initiation Factors Gene Family AT3G22980 37.037 1.44e-20 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02673 K02355 - gmx:100783315 525.783