Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02656 ATGAACCTGAGCTACGAACAGAGGCTTCAGGCAGTTGCCAAAATCGTACTCAGTGAAGACGCACGCACTGGCGACGCGCCGCCTTGCGAGGAAGAGCTTGGGGTCAGGGCGACCCTCAAACCCCACCAGGTGGAAGGGGTTTCGTGGCTCATACGGAGGTATAAACTCGGCGTCAACGTCATCCTCGATTGTCAGATGGGACTGGGCAAGACATTGCAAGCTATCTCCTTCTTAAGCTATTTAAAAGTGTGTCGGCTGTCACTTGGGCCATTTTTGGTTATATGCCCTCTAAGCGTGACAGATGGTTGGGTGTCAGAGATAGTCAAATTTTCCCCTAAACTAGAAGTCTTCAAATATGTTGGTGATAAAGAATACAGGCGCAGTCTGCGCATGAAAATACATGAACATGTAACAAGGCAGTCATCAACATCCAATGTCATGTTGCCTTTTGATTTGCTGTTAACAACATATGACATTGCACTGATGGATAAGGATTTCCTTTGTCAAATACCATGGCAATATGCAATCATTGATGAAGCTCAAAGACTTAAAAACCCATCAAGTGTTTTATTTAATGTGCTCAAAGATCACTATATCATGCCAAGGCGGTTGTTGATGACTGGCACGCCTATTCAGAACAACCTTTCTGAACTGTGGGCGTTGATGTATTTTTGCATGCCATCTGTCTTTGGTACACTGGATCAATTTCTTTCTACATTCAAGGACATCACTGATCTTACCTCAGTTCATAATTCTCCAAAGGTAAAGGAGAGACTTCAAATCCTGAGAAGTGTATTGGGAGCCTTTATGCTTCGACGTACCAAATCAAAGCTTATGGAGTGTGGAAATTTAGTGCTGCCACCTCTTACTGAGACAACTGTGTTAGTACCCCTTGTCAGCCTGCAAAAAAAGGTCTACATGTCAATATTGAGGAAGGAACTTCCTAAGCTACTTGCACTATCTTCTGGAACATCAAATCATCAGTCACTACAAAATATTGTGATACAGCTAAGAAAAGCATGCAGCCATCCTTATCTCTTTCCAGGTATTGAGCCTGAACCATATGAAGAAGGTGAACATCTGGTTCAGGCTAGTGGTAAACTATTGATTCTGGACCAACTTCTTCAGAAGCTGCATTGTTCTGGACACCGTGTTCTTCTTTTTGCTCAAATGACCCATACGCTTGATATTTTACAGGATTTTTTGGAGCTACGGAAGTATTCTTATGAGCGTCTTGATGGATCAATTAGGGCCGAGGAGCGGTTTGCTGCAATAAGGAGTTTTAGTAGCTCATCAGCTAATGTGGGCACGGATACTGAAACTGACCAAAATGGAGCTTTTGTTTTTATGATCTCAACAAGAGCTGGAGGAGTTGGCTTGAATCTTGTGGCTGCTGATACTGTGAGTTTTGTCTAA 1416 0.4308 MNLSYEQRLQAVAKIVLSEDARTGDAPPCEEELGVRATLKPHQVEGVSWLIRRYKLGVNVILDCQMGLGKTLQAISFLSYLKVCRLSLGPFLVICPLSVTDGWVSEIVKFSPKLEVFKYVGDKEYRRSLRMKIHEHVTRQSSTSNVMLPFDLLLTTYDIALMDKDFLCQIPWQYAIIDEAQRLKNPSSVLFNVLKDHYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDITDLTSVHNSPKVKERLQILRSVLGAFMLRRTKSKLMECGNLVLPPLTETTVLVPLVSLQKKVYMSILRKELPKLLALSSGTSNHQSLQNIVIQLRKACSHPYLFPGIEPEPYEEGEHLVQASGKLLILDQLLQKLHCSGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSIRAEERFAAIRSFSSSSANVGTDTETDQNGAFVFMISTRAGGVGLNLVAADTVSFV. 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02656 471 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 370 471 IPR001650 -
Seca1g02656 471 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 31 471 IPR031053 GO:0003678|GO:0006281|GO:0006338
Seca1g02656 471 Gene3D - 13 284 IPR038718 -
Seca1g02656 471 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 51 228 IPR014001 -
Seca1g02656 471 Pfam SNF2-related domain 57 346 IPR000330 GO:0005524|GO:0140658
Seca1g02656 471 SMART ultradead3 35 236 IPR014001 -
Seca1g02656 471 CDD SF2_C_SNF 359 468 - -
Seca1g02656 471 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 273 IPR027417 -
Seca1g02656 471 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 286 468 IPR027417 -
Seca1g02656 471 Gene3D - 285 471 IPR027417 -
Seca1g02656 471 Pfam Helicase conserved C-terminal domain 367 468 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02656 Seca-Chr1 70522944 70539019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02656 365 468 RAD5 or RAD16-like Gene Family AT5G22750 33.654 5.85e-10 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca1g02656 SNF2_N 1.8e-47 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02656 K20092 - gmx:100797182 782.326