Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02648 ATGGAATTTATTCTGAAGGAGCAATTGGTCCAAGGTTCAACTCGATTATTGGAGCTAAAAAGTCATCACGAGGAAAGAATAAGAATATTACAGCAATTGTGTGATCTACAGAACACATTGAAGAATTTGAAGTGTATTACTTCTTCAAATGCATTCCAATTGGTCAGAGATCAGATAGAAAAATCAAAATCAGAAGTTCGGGTGTATCAGGGCTTATACGAGAAACTACAGGTTGAGAAGGATATTCTTGCATGGAGGGAGAGGGAGTGGTACATTAAAAATGATTTAGCAGATATTTTTCAAAGATCTGTATCAGTTTCTGACTTAAGAGTAGCTGATATACGTACTGAGTTACAGAAAAAGATAGAGGAAAGAAATGTTATTGAAAATAAGCTGAAAGAGGAAACAAGAGAACCAGGAAGGAAACAAATTATTGCAGAATTTAAATCTCTGCTTTCTTCGTTTCCTGAGGAAATGGAATCTATGCAACGTCAACTAAGTAAGTATAAAGAATCAGCTTCAGATATCCATTCTCTGCGTGCAGATGTGCAGTCTATTTCTAGTATTCTTGACAGGAAGGTAAAAGAATGTGATGCATTATCTGCTAGGTCTGCTGATCAACTTGCTGAGATAAAGAGGCTACATGCTATGGTTAAAGATTTGAGAGAGAGTGAGCAGGAATTGGAGTTGATACTAGAGATGTTTAGACGTGAGTCCATTGATTCGAGGGATGTCATGGAAGCAAGGGAGGCAGAATACAGAGCATGGGCACATGTTCAAAGTTTGAAATCTTCTCTGGATGAGCACAACTTAGAACTTCGAGTTAAGACAGCAAATGAAGCAGAGGCGAGGTCTCAACAAAAGCTGGCTGCTGCCGAAGCTGAGATAGCAGACATGAGAAAAAAATTAGAAGATTCTAAAAGGGAGATGTGTAAACTGTCTGATGTCTTGAGATCTAAAGGTGAAGAAAATGAGGCCTACTTATCTGAAATAGAGACTATTGGACAAGCATATGATGACATGCAAACTCAAAACCAACATCTGTTACAGCAGATTACTGAGAGAGATGATTACAATATTAAGCTTGTTCTAGAAGGTGTAAGGGCGAGACAAAAGCAAGATTCTTTAATCCTGGAGAAGCGGGTAATGGAACAAGAGATCCAGCAAGCAAATGTATCCCTGAATTTATATGATATGAAAGCTGCAAGAATTGAAGAACAGTTGAGACTTTGTTCAGATCAGATTCAGAGACTTTCAGATGATAGAGTTCAAAGTTCTGCAACTTTGGAAAATACACAAAGAAGGCTCTCGGATATTAGATCATCATCTCAACAGGTTAGAGATACAGTGGTGGAAATGCAATCTCAAATTGGTAGTAGTCGAGTGACCCGTATGGAGTTACAAGTAGAACTTGAGAAAGAAAGGTTTACGAAAAAAAGGATAGAGGAGGATCTGGAGGTTGCTAGGAGAAAGTTGTCACGTCTTAAAGCACAGAATGAGTGTTCCTCAATAACTGAAAAGCTTCAGCAGGAGCTGGGAGAGTACAGAGAAATTGTCAAGTGTACTATATGCCAAGACAGGATAAAAGAGGTGGTAATTACAAAATGCTATCACTTGTTCTGCAACTCATGTGTCCAGAAAGTTGCTGGGAGTAGGCACCGCAAATGTCCACAGTGTGGTACAAGCTTTGGGGCTAATGATGTTAAGCCTGTTTATTTGTAA 1722 0.3873 MEFILKEQLVQGSTRLLELKSHHEERIRILQQLCDLQNTLKNLKCITSSNAFQLVRDQIEKSKSEVRVYQGLYEKLQVEKDILAWREREWYIKNDLADIFQRSVSVSDLRVADIRTELQKKIEERNVIENKLKEETREPGRKQIIAEFKSLLSSFPEEMESMQRQLSKYKESASDIHSLRADVQSISSILDRKVKECDALSARSADQLAEIKRLHAMVKDLRESEQELELILEMFRRESIDSRDVMEAREAEYRAWAHVQSLKSSLDEHNLELRVKTANEAEARSQQKLAAAEAEIADMRKKLEDSKREMCKLSDVLRSKGEENEAYLSEIETIGQAYDDMQTQNQHLLQQITERDDYNIKLVLEGVRARQKQDSLILEKRVMEQEIQQANVSLNLYDMKAARIEEQLRLCSDQIQRLSDDRVQSSATLENTQRRLSDIRSSSQQVRDTVVEMQSQIGSSRVTRMELQVELEKERFTKKRIEEDLEVARRKLSRLKAQNECSSITEKLQQELGEYREIVKCTICQDRIKEVVITKCYHLFCNSCVQKVAGSRHRKCPQCGTSFGANDVKPVYL. 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02648 573 ProSiteProfiles Zinc finger RING-type profile. 521 559 IPR001841 -
Seca1g02648 573 CDD RING-HC_Bre1-like 514 571 - -
Seca1g02648 573 Coils Coil 218 238 - -
Seca1g02648 573 ProSitePatterns Zinc finger RING-type signature. 536 545 IPR017907 -
Seca1g02648 573 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 500 573 IPR013083 -
Seca1g02648 573 Coils Coil 401 435 - -
Seca1g02648 573 FunFam E3 ubiquitin protein ligase 502 573 - -
Seca1g02648 573 Coils Coil 111 138 - -
Seca1g02648 573 SMART ring_2 521 559 IPR001841 -
Seca1g02648 573 Coils Coil 275 309 - -
Seca1g02648 573 Coils Coil 464 498 - -
Seca1g02648 573 SUPERFAMILY RING/U-box 513 572 - -
Seca1g02648 573 Pfam Zinc finger, C3HC4 type (RING finger) 519 561 - -
Seca1g02648 573 PANTHER RING FINGER PROTEIN-RELATED 5 573 IPR013956 GO:0004842|GO:0010390
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02648 Seca-Chr1 69952529 69974741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02648 493 572 C3H Transcription Factor Family AT2G42030 29.630 2.58e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02648 K10696 - gmx:100790744 928.702