Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02647 ATGGAAAGTGATGCTAGTGAAAGCATGTTTGGCAGCACATTCTCATCTTCTTCCTCTACATCCATCATAACCAACACTAAAACCACCATCACATCCTCACCAACATCTTCTACCTTAAACTCAAATTCATGCACCAAAAAAAGCCACCCCAATGATTCAACAAGTGCTCCTCCAAACTTAGAAAATAGCAAGGAGTGCAACAAAAAGAGGCAGAGAAGTGGCAATGACAACAGCAAACACCCAACTTACAGAGGAGTAAGAATGAGAGCTTGGGGCAAATGGGTGTCTGAGATTCGTGAACCAAGAAAGAAGTCAAGAATATGGCTTGGAACATACCCAACTGCAGAAATGGCAGCAAGAGCACATGATGTAGCAGCTTTAGCTATCAAAGGCCATTCAGCTTACCTCAATTTCCCAAATTTGGCTCAACATCTTCCAAGGCCTATCAGCACATCTCCCAAGGACATTCAAGCTGCAGCTGCAAAAGCAGCAACCACTGACTTTTCAGAGGCTAAGCATTGTGAAGCTGAACAGAACCAAACAGAACAAGCTTCTTCTTCAACTCTGTCCATAGACAATACTCCAGCAGAGTCTTCAAGTTCTCCATCTACTACTACTACTGGTGATGATGACACACTGTTTGACTTACCAGATCTATTCCCTGATGGAAATAATGGACTTAACTACTATTCTTCTTGGCATTTATGTGCTGTAGATAGTGGATTCAGGCTTGAGGAGCCATTTTTGTGGGAAAACTACTAG 762 0.4252 MESDASESMFGSTFSSSSSTSIITNTKTTITSSPTSSTLNSNSCTKKSHPNDSTSAPPNLENSKECNKKRQRSGNDNSKHPTYRGVRMRAWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAYLNFPNLAQHLPRPISTSPKDIQAAAAKAATTDFSEAKHCEAEQNQTEQASSSTLSIDNTPAESSSSPSTTTTGDDDTLFDLPDLFPDGNNGLNYYSSWHLCAVDSGFRLEEPFLWENY. 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02647 253 SMART rav1_2 82 145 IPR001471 GO:0003700|GO:0006355
Seca1g02647 253 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Seca1g02647 253 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Seca1g02647 253 MobiDBLite consensus disorder prediction 1 84 - -
Seca1g02647 253 ProSiteProfiles AP2/ERF domain profile. 82 139 IPR001471 GO:0003700|GO:0006355
Seca1g02647 253 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 57 220 - -
Seca1g02647 253 Pfam AP2 domain 81 132 IPR001471 GO:0003700|GO:0006355
Seca1g02647 253 Gene3D AP2/ERF domain 82 140 IPR036955 GO:0003700|GO:0006355
Seca1g02647 253 SUPERFAMILY DNA-binding domain 82 140 IPR016177 GO:0003677
Seca1g02647 253 MobiDBLite consensus disorder prediction 63 77 - -
Seca1g02647 253 MobiDBLite consensus disorder prediction 178 211 - -
Seca1g02647 253 MobiDBLite consensus disorder prediction 168 212 - -
Seca1g02647 253 MobiDBLite consensus disorder prediction 1 62 - -
Seca1g02647 253 CDD AP2 83 141 IPR001471 GO:0003700|GO:0006355
Seca1g02647 253 FunFam Ethylene-responsive transcription factor 2 81 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02647 Seca-Chr1 69869464 69870225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02647 68 249 AP2-EREBP Transcription Factor Family AT2G44940 54.808 7.98e-69 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca1g02647 AP2 3.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02647 - - gmx:100776436 300.827