Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02646 ATGGATTTAAATAGTGATGATTCGGCTGTTAATCTGGAAGATGATAGAGACCTAAGTTATAGTGATTCTTCTAGCTCTAGCGATGATGAGAATCATAATGAAAATGATAGAGTAACAGATACTGAGGACGAAGTTAATGAAGAAGAGGTAGACACTGATGAGGTAAATGAATTTATGGATGCAGAAGTTGGAGGGGAGGTGTCAAGGAGGATAATTGATTTGACAAATGATGATATATGGGCATTGGAATTCTGTACTGAAAATGATGCGTTCAATTTTTACTTTTCTTATGCAAAATGTCATGGATTTGCTGTGAGGAGGGATGATGTAATTAAAGACAGTAAAGGTATGGTCATAATGCGACAGTTCTTATGTAGTAGGGCTGGTTTGAGGGACAAAAAGCATTTGATTAGATTAGATCGAAAAAAGGAACATAGGCCTCTTACTCGAACAAATTGTCTAGCTAAGTTGAGGGTTCGCTTTGATTATAAGACTGGGAAATTTAAGGTTGTTTCCTTTTTAGACTCTCATAACCATGATTTGACCCCTGCTAAATTTGTTCCTTTAATGCCTGCATATCGTGGTTTGAGTGATGGCGATAAAGCCCAAGTTGATGCATTGCATTCTCATGGTGTTAGAACTTGTCAAATAATGGGTTTTCTTGTTGATAAAAAAGGAGGATATAGAAACGTTGGTTTTTCAAAGAAAGATTTATACAACTACATAGATGAGGTTAGGAAGGGTAGGATAAAAGATGGGGATGCAGTGGCTGGGTTAAGTTATTTGCAAGGAAAGGCAAATAACAATCCAATGTTTTTTTCAAGATTTTTATGTTCTGAGGATGGGAAACTCACTCATCTGTTTTGGTGTGATGAAATAAGTCGGGCAGACTATCAATTTTTTGGTGATGTGCTTGCATTTGATGCAACCTACAAGAAGAATAGGTATAAATATCCACTGGTGATTTTTTCTGGTAAAAATCACCACTCTCAGACAGTTATATTTGGGTGTGCACTCATTGCTGATGAAACAATCGATACTTATAAGTGGGTTTTAAGAATGTTTTCAGAAGCAATGTTTGTCACACCCTAA 1092 0.3636 MDLNSDDSAVNLEDDRDLSYSDSSSSSDDENHNENDRVTDTEDEVNEEEVDTDEVNEFMDAEVGGEVSRRIIDLTNDDIWALEFCTENDAFNFYFSYAKCHGFAVRRDDVIKDSKGMVIMRQFLCSRAGLRDKKHLIRLDRKKEHRPLTRTNCLAKLRVRFDYKTGKFKVVSFLDSHNHDLTPAKFVPLMPAYRGLSDGDKAQVDALHSHGVRTCQIMGFLVDKKGGYRNVGFSKKDLYNYIDEVRKGRIKDGDAVAGLSYLQGKANNNPMFFSRFLCSEDGKLTHLFWCDEISRADYQFFGDVLAFDATYKKNRYKYPLVIFSGKNHHSQTVIFGCALIADETIDTYKWVLRMFSEAMFVTP. 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02646 363 MobiDBLite consensus disorder prediction 9 39 - -
Seca1g02646 363 PANTHER OS01G0519700 PROTEIN 81 359 - -
Seca1g02646 363 MobiDBLite consensus disorder prediction 1 52 - -
Seca1g02646 363 Pfam FAR1 DNA-binding domain 92 182 IPR004330 -
Seca1g02646 363 Pfam MULE transposase domain 304 354 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02646 Seca-Chr1 69585071 69586162 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca1g02646 FAR1 2.8e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02646 - - ccaj:109794460 398.282