Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02631 ATGGTGTTTCACGGAGGAACGAGGGTGGTTCGTTACGAAAGGATTTCAATCCCGTTGCCTGGATTTTGCTTTCTGAAGACCTCTGAGATCAAGCAAACTCACGGGCGATCGGAATACCTTCTAGATTACATTGGCGTTCTAACGGCAGTCTCGGAAGAGATTAACTTGACCAAAGAGGAGAGGCAGACAAGAATGATATTGCTGGACATGGCTGATGAAACGGGGGACATTAGGTGTGCAATTTTCGGCAGCATGGTGGACACTGTAATGGGGTACCTCACACTTCCTCGCATTGGGCTTCCTATAGTTATCATTCAGTTCGCAAGGATAAACATCTATAAGGGAGAAGTTGGAATCCAGAATCTGATGAATGCTTCCAAGGTTCTATGGAACCCAGAGATACCAGAGGCCATAGAGTTCAAAAATAGCCTAGTTGTGCATGAGGTCGAGACAGATCTTCAGATTGGAACAATATCTGACCGAAGCAGGCCTGCTTCCATTAAGGATGAGTTTCTCAAACTGTACCCTAGGAAGTCTTTGTATGAGCTACTGCAGACAAATGAGGATGGATGCTTCATCATTCTAGGAACTGTTGACGAAGTTATGCAAGAATCTTTGTGGTGGTACATGGCGTGCAAGTGCATGAAGGCGGTTTCCTACGATGACGGGGTACCTTACTGCGAGGATTGTGATCTTTATGTTCTAGACTGTACTCCAAGGTACAAGTTAAAGCTTGCTGTCTCCGACGGATCTGATAGCGTTAGTTTGATCCTTTTCGACTCCGAGAGCTACTCATTGTTGGGCAAGTCGTGTCGTGAACTGTTATCGGAGAAGAGGTACACTCGGACATGTCCTTACCCTGCTGCTCTAATGGACTTAGTTGGACATGAGTTCCTATTTCGCGTTGAGGTCAAAGATGATGCTGTGTACTCATTTGATGAGTGCTTCAGGGTGCGACGAGTTTCATCTGAACCCACACTGATTCGAGAGTACACTGAAGGATTAGAGGAGGAAACTCCACTTAAGCTCAAGTTTGCACCGAGTTTTACCAAGAATGTTACGTCTGAAGGGTCAAGCACTGGCATGCATGTGTCTGCTATTTGCAATGCTTCTGTCACTGAAATAGATGTTAGCCCATTATCAAATGATCCCTCGCCATCTGTTGGTGAAGACAGTGGGAGTGCATCGAAGAGGGAACCTGGGCATGCAACGGAATGTGCCACTGAGAAGAAGAAACGGGGCAGGGGGAAGTCCATCAAACTGGAAAGAACTTGA 1275 0.4627 MVFHGGTRVVRYERISIPLPGFCFLKTSEIKQTHGRSEYLLDYIGVLTAVSEEINLTKEERQTRMILLDMADETGDIRCAIFGSMVDTVMGYLTLPRIGLPIVIIQFARINIYKGEVGIQNLMNASKVLWNPEIPEAIEFKNSLVVHEVETDLQIGTISDRSRPASIKDEFLKLYPRKSLYELLQTNEDGCFIILGTVDEVMQESLWWYMACKCMKAVSYDDGVPYCEDCDLYVLDCTPRYKLKLAVSDGSDSVSLILFDSESYSLLGKSCRELLSEKRYTRTCPYPAALMDLVGHEFLFRVEVKDDAVYSFDECFRVRRVSSEPTLIREYTEGLEEETPLKLKFAPSFTKNVTSEGSSTGMHVSAICNASVTEIDVSPLSNDPSPSVGEDSGSASKREPGHATECATEKKKRGRGKSIKLERT. 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02631 424 CDD RPA1_DBD_C 192 307 IPR047192 -
Seca1g02631 424 SUPERFAMILY Nucleic acid-binding proteins 24 144 IPR012340 -
Seca1g02631 424 Gene3D - 16 152 IPR012340 -
Seca1g02631 424 Gene3D - 168 336 IPR012340 -
Seca1g02631 424 Pfam Replication factor-A C terminal domain 192 308 IPR013955 -
Seca1g02631 424 SUPERFAMILY Nucleic acid-binding proteins 175 309 IPR012340 -
Seca1g02631 424 CDD RPA1_DBD_B_like 42 144 - -
Seca1g02631 424 MobiDBLite consensus disorder prediction 378 392 - -
Seca1g02631 424 MobiDBLite consensus disorder prediction 378 424 - -
Seca1g02631 424 MobiDBLite consensus disorder prediction 395 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02631 Seca-Chr1 68721640 68723719 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02631 13 304 Core DNA Replication Machinery Family AT5G08020 23.453 2.66e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02631 - - lja:Lj1g3v3385890.1 300.441