LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca1g02630	ATGCCTATTATAAAATTCTCAACTCTAAATTGCAGACGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCAGTGGAGATGCACTTGGTGAGGAATTTAAAGGCTATGTCTTCAAAATCACTGGAGGTTGTGACAAACAAGGATTCCCAATGAAGCAGGGAGTGCTGACCCCTGGTCGTGTGCGCCTCTTGCTTCACAGGGGAACGCCTTGTTTTCGTGGATATGGAAGGCGTAATGGAGAGCGCAGGAGGAAGTCTGTTCGTGGGTGCATTGTCAGCCCAGACCTCTCTGTTCTAAACTTGGTAATTGTGAAGAAGGGTGACAATGATTTACCAGGCCTGACTGACATTGAGAAGCCAAGGATGAGAGGTCCAAAGAGAGCATCCAAAATCCGTAAGCTGTTCAACTTGTCAAAGGAGGATGATGTGAGGAAGTATGTCAACACATACCGTCGGACATTCACAACAAAATCTGGGAAAAAGGTAAGCAAAGCTCCGAAAATACAACGACTTGTCACTCCTCTTACACTCCAAAGAAAGCGGGCAAGGATTGCTGATAAGAAGAAGAGAATCGCTAAGGCAAAATCAGAAGCAGCTGAGTACCAGAAGCTCCTTGCCTCCAGGTTGAAGGAGCAGAGGGAGCGTCGTAGTGAGAGTTTGGCTAAGAGGAGATCCAAGATCTCTAGTGTTACTAAGGCAGCTGCCACTCTATAA	714	0.4664	MPIIKFSTLNCRRAFWDKRISQEVSGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGDNDLPGLTDIEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKRRSKISSVTKAAATL.	238

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca1g02630	237	Coils	Coil	177	204	-	-
	Seca1g02630	237	PIRSF	RPS6e	4	236	IPR014401	GO:0003735\|GO:0005840\|GO:0006412
	Seca1g02630	237	Pfam	Ribosomal protein S6e	12	116	IPR001377	GO:0003735\|GO:0005840\|GO:0006412
	Seca1g02630	237	ProSitePatterns	Ribosomal protein S6e signature.	40	51	IPR018282	GO:0003735\|GO:0005840\|GO:0006412
	Seca1g02630	237	MobiDBLite	consensus disorder prediction	211	237	-	-
	Seca1g02630	237	SMART	Ribosomal_S6e_2	1	116	IPR001377	GO:0003735\|GO:0005840\|GO:0006412
	Seca1g02630	237	Gene3D	-	121	222	-	-
	Seca1g02630	237	PANTHER	40S RIBOSOMAL PROTEIN S6	13	227	IPR001377	GO:0003735\|GO:0005840\|GO:0006412
	Seca1g02630	237	MobiDBLite	consensus disorder prediction	211	225	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca1g02630	Seca-Chr1	68712705	68715871	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca1g02630	51	230	Cytoplasmic Ribosomal Protein Gene Family	AT4G31700	89.444	1.20e-105	301

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca1g02630	K02991		-	gmx:100801194	389.808