Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca1g02629 | ATGCCTATGATAAAATTCTCAACTCTAAATTGCAGACGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCAGTGGTGATGCACTTGGTGAGGAATTTAAAGGCTATGTCTTCAAAATCACTGGAGGTTGTGACAAACAAGGATTCCCAATGAAGCAGGGAGTGCTGACCCCTGGCCGTGTGCGCCTCTTGCTTCACAGGGGAACTCCTTGTTTTCGTGGATATGGAAGGCGTAATGGAGAGCGCAGGAGGAAGTCTGTTCGTGGGTGCATTGTCAGCCCAGACCTCTCTGTTCTAAACTTGGTAATTGTGAAGAAGGGTGACAATGATTTACCAGGCCTGACTGACATTGAGAAGCCAAGGATGAGAGGTCCAAAGAGAGCATCCAAAATCCGTAAGCTGTTCAACTTGTCAAAGGAGGATGATGTGAGGAAGTATGTCAACACATACCGTCGGACATTCACAACAAAATCTGGGAAAAAGGTAAGCAAAGCTCCGAAAATACAACGACTTGTCACTCCTCTTACACTCCAAAGAAAGCGGGCAAGGATTGCTGATAAGAAGAAGAGAATCGCTAAGGCAAAATCAGAAGCAGCTGAGTACCAGAAGCTCCTTGCCTCCAGGTTGAAGGAGCAGAGGGAGCGTCGTAGTGAGAGTTTGGCTAAGAGGAGATCCAAGATCTCTAGTGTTACTAAGGCAGCTGCCACTCTATAA | 714 | 0.4678 | MPMIKFSTLNCRRAFWDKRISQEVSGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGDNDLPGLTDIEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKRRSKISSVTKAAATL. | 238 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca1g02629 | 237 | Coils | Coil | 177 | 204 | - | - | |
| Seca1g02629 | 237 | PIRSF | RPS6e | 3 | 236 | IPR014401 | GO:0003735|GO:0005840|GO:0006412 | |
| Seca1g02629 | 237 | SMART | Ribosomal_S6e_2 | 1 | 116 | IPR001377 | GO:0003735|GO:0005840|GO:0006412 | |
| Seca1g02629 | 237 | PANTHER | 40S RIBOSOMAL PROTEIN S6 | 13 | 227 | IPR001377 | GO:0003735|GO:0005840|GO:0006412 | |
| Seca1g02629 | 237 | ProSitePatterns | Ribosomal protein S6e signature. | 40 | 51 | IPR018282 | GO:0003735|GO:0005840|GO:0006412 | |
| Seca1g02629 | 237 | MobiDBLite | consensus disorder prediction | 211 | 237 | - | - | |
| Seca1g02629 | 237 | Gene3D | - | 121 | 222 | - | - | |
| Seca1g02629 | 237 | MobiDBLite | consensus disorder prediction | 211 | 225 | - | - | |
| Seca1g02629 | 237 | Pfam | Ribosomal protein S6e | 12 | 116 | IPR001377 | GO:0003735|GO:0005840|GO:0006412 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca1g02629 | Seca-Chr1 | 68622899 | 68626918 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca1g02629 | 51 | 230 | Cytoplasmic Ribosomal Protein Gene Family | AT4G31700 | 89.444 | 1.04e-105 | 301 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca1g02629 | K02991 | - | gmx:100801194 | 389.808 |