Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02615 ATGCACGCGCCGGTGTACTTCGAGAAGTTTGAGGTCCACGGGACTATGAAGGTTGTGCCTGCGGAGGTAATGGACTCGATCCGTAAGAACAAGGTGTGCCTTAAGGGAGGGCTTGTTACCCCTATGGGTGGTGGGGTTAGTTCCCTTAACGTGCAGCTCAGAAAGGAGCTGGATCTCTACGCTTCACTCGTCAATTGCTTCAACCTCCCTGGCTTGCCCACGCGCCACGATAACGTTGACATCGTTGTCATTAGGGAGAACACCGAAGGCGAGTACTCTGGCCTTGAACACGAGGTCGTTCCTGGCGTCGTTGAAAGCCTTAAGCAGAGTCCTGGTTTGCATCTGATACATCTACTGGGTATCTTGAAGATGCTATTGCTGGATGGGGCATTTGGTGCAAGCAACACAACAGATTCTATTCTTTTGCCTTTTTCCCTAGCTAATCTTATTCAGATTAGTAATATTATTATTGATGCTAAATCTGGTGTGAGTGGAGCAGGGTGTAGTGCCAAAGAAAATTTGTTGTTCACTGAAGTAACTGAGGGTGTTGGTGGTGCAGGGTTGAGAGCTGCTATTGGACTTTCAGAACATGGGTTCAATACTGCTTGCATTACCAAGCTCTTCCCAACTTGTTCACACACTGTTGCAGCTCAGCTGATTCAATTTAGCATGCAGACATCTGCTTCTGTGAATGCAGGATTGTTGTTGATGGCAATCATGGCCATCCTTTTTCCTGCTGTTCTATATTACACACGAACTGAGGTTCATTTTGGTAAATCAGAGTTGGCACTCTCAAGATTCAGCAGCTGCATCATGCTTGTGGCCTATGCGGCATACCTATTTTTTCAATTAAAAAGTGAAAGAAGTCTATATGTCTCTGTGAATGAGATTAGGACTGTGGCTCTGCGCCACAGACAACAATGA 924 0.4621 MHAPVYFEKFEVHGTMKVVPAEVMDSIRKNKVCLKGGLVTPMGGGVSSLNVQLRKELDLYASLVNCFNLPGLPTRHDNVDIVVIRENTEGEYSGLEHEVVPGVVESLKQSPGLHLIHLLGILKMLLLDGAFGASNTTDSILLPFSLANLIQISNIIIDAKSGVSGAGCSAKENLLFTEVTEGVGGAGLRAAIGLSEHGFNTACITKLFPTCSHTVAAQLIQFSMQTSASVNAGLLLMAIMAILFPAVLYYTRTEVHFGKSELALSRFSSCIMLVAYAAYLFFQLKSERSLYVSVNEIRTVALRHRQQ. 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02615 307 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 2 108 - -
Seca1g02615 307 Pfam FAD binding domain 182 218 IPR003953 -
Seca1g02615 307 Gene3D Isopropylmalate Dehydrogenase 1 116 - -
Seca1g02615 307 SMART Iso_dh_2 1 242 IPR024084 -
Seca1g02615 307 Pfam Isocitrate/isopropylmalate dehydrogenase 13 101 IPR024084 -
Seca1g02615 307 SUPERFAMILY FAD/NAD(P)-binding domain 182 226 IPR036188 -
Seca1g02615 307 Gene3D Dihydrodipicolinate Reductase; domain 2 134 197 - -
Seca1g02615 307 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 140 183 - -
Seca1g02615 307 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 5 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02615 Seca-Chr1 68227069 68231170 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02615 211 296 Antiporters AT1G55730 65.116 3.16e-27 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02615 K00030 - gmx:100777867 214.157