Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02606 ATGGCAAGAAAAGATGATGGATGGGCGATAGGAATCGATCTTGGCACAACCTACTCTTGCGTTGCAGTATGGCAAGAGCAACACTGTCGAGTGGAGATTATCCACAACGACCAAGGCAACAGAACCACGCCTTCTTGTGTTGCTTTCACAGACAACCAAAGATTGATTGGTGATGCTGCTAAGAATCAGGCCGCCATCAACCCCACCAACACTGTCTTTGGTATGCTAAGAGGCTAA 237 0.4768 MARKDDGWAIGIDLGTTYSCVAVWQEQHCRVEIIHNDQGNRTTPSCVAFTDNQRLIGDAAKNQAAINPTNTVFGMLRG. 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02606 78 Gene3D - 1 77 - -
Seca1g02606 78 PANTHER HEAT SHOCK PROTEIN 70KDA 9 75 IPR013126 GO:0005524|GO:0140662
Seca1g02606 78 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Seca1g02606 78 PRINTS 70kDa heat shock protein signature 8 21 - -
Seca1g02606 78 PRINTS 70kDa heat shock protein signature 60 68 - -
Seca1g02606 78 PRINTS 70kDa heat shock protein signature 38 50 - -
Seca1g02606 78 SUPERFAMILY Actin-like ATPase domain 8 76 IPR043129 -
Seca1g02606 78 FunFam heat shock 70 kDa protein-like 3 76 - -
Seca1g02606 78 Pfam Hsp70 protein 9 75 IPR013126 GO:0005524|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02606 Seca-Chr1 68006755 68007300 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02606 1 77 Calmodulin-binding Proteins AT3G12580 77.922 7.53e-34 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02606 K03283 - gmx:102667578 133.65