Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02603 ATGCTGGGAATGACTTCAGAAGCTAACCATGGAGATGGCTTCAATGGTGATACTGATAGTTCATCAAAGGCAATACACTTTTTCAGGATCATGCATCCTGAAACACTTTTGCACGGAAAACTAAGAATTCCAGAAAAGTTTGTGAGAAAACATGGAGAAAGCTTATCCAACACAATGTTTCTTAAGCTTCCAAATGGTGCAGAATGGAAAGTAAATGTGGAGAAACATGATGATGGCAGAGTTTGGTTTCATAAGGGTTGGAAAGAGTTTGTGGAGTATTACTCTCTAGCCCATGGTCATCTATTGGTTTTCAAATTTGATGGAACATCCCATTTTCATGTACACATCCATGATCCGAGTACCATGGAAATAGACTACCCTCTCAATAGGGTAAATCTTAAAAGGGCTAACAATAGTGAAGTAAAAATTCAACCACGGAAGACGCGGAGAACAAATGGAAACAACAAGGATGAGAGTATGTTGAAGAATCCTAGTGAAGAAGAGAGGAGAAACATTGACCTGCAACATACTAATAAAATGTCATCCATTGGTAATTGTGGTGCAAATGAAGCTGTTGGAAATACTTCCTTCATGATGATAATAAGACCATGCCACTTAAGGTGGTGTGTGGGCTACATCAAACCCGGTGGACAAAATGTAACGCTGCAGGTTGGGGACAGATCATGGAGGGTTAATTTGATACATTACCAAAACAAATATTCAATAACTTACCTTTCTGCAGGATGGTCAATATTCGCAAAGGAAAACAATTTAAAATTAGGAGATGCTTGCTTGTTCGAGCTCCTAAATAGTAGTGATGACATGCTGGTGAAAGTTTCCATTTCTAAATGCTCCTTTGTTTAG 864 0.3866 MLGMTSEANHGDGFNGDTDSSSKAIHFFRIMHPETLLHGKLRIPEKFVRKHGESLSNTMFLKLPNGAEWKVNVEKHDDGRVWFHKGWKEFVEYYSLAHGHLLVFKFDGTSHFHVHIHDPSTMEIDYPLNRVNLKRANNSEVKIQPRKTRRTNGNNKDESMLKNPSEEERRNIDLQHTNKMSSIGNCGANEAVGNTSFMMIIRPCHLRWCVGYIKPGGQNVTLQVGDRSWRVNLIHYQNKYSITYLSAGWSIFAKENNLKLGDACLFELLNSSDDMLVKVSISKCSFV. 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02603 287 CDD B3_DNA 26 118 IPR003340 GO:0003677
Seca1g02603 287 ProSiteProfiles B3 DNA-binding domain profile. 26 120 IPR003340 GO:0003677
Seca1g02603 287 PANTHER B3 DOMAIN-CONTAINING 20 270 - -
Seca1g02603 287 SUPERFAMILY DNA-binding pseudobarrel domain 21 120 IPR015300 -
Seca1g02603 287 Gene3D - 19 121 IPR015300 -
Seca1g02603 287 SMART B3_2 27 120 IPR003340 GO:0003677
Seca1g02603 287 SMART B3_2 197 282 IPR003340 GO:0003677
Seca1g02603 287 Pfam B3 DNA binding domain 28 118 IPR003340 GO:0003677
Seca1g02603 287 Pfam B3 DNA binding domain 197 279 IPR003340 GO:0003677
Seca1g02603 287 ProSiteProfiles B3 DNA-binding domain profile. 227 283 IPR003340 GO:0003677
Seca1g02603 287 SUPERFAMILY DNA-binding pseudobarrel domain 197 281 IPR015300 -
Seca1g02603 287 MobiDBLite consensus disorder prediction 144 167 - -
Seca1g02603 287 Gene3D - 178 285 IPR015300 -
Seca1g02603 287 CDD B3_DNA 213 279 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02603 Seca-Chr1 67954464 67956328 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02603 4 143 B3 DNA Binding Superfamily AT4G01580 30.714 3.67e-21 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca1g02603 B3 9.9e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02603 - - aprc:113849508 348.591