Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02599 ATGACTTCAAAACCTATCAATGGAGATGGCTTCAACGGTCACACTACATCAAAGCCAATCCACTTTTTCCGCATCATGCACCATGAAACCCTTTCGCAGGGAAAGCTAAGGATTCCAGAAAAGTTTGTGAGGAAATATGGAGAAAGCTTATCCAACACAATGTTTCTTAAGCTTCCAAACGGTGCAGAATGGAAAGTAGATGTGGAGAAACATGATGATGGCAGAGTTTGGTTTCAAAACGGTTGGAAAGAGTTTGAGGAGTATTACTCACTAGCCCATGGCCATCTATTGGTTTTCAAATTTGATGGAATTACATCCCATTTTCATGTACACATCTATGATATGAGTACCATGGAAATAGACTACCCTCTCAAAAAAGATGAGGGTAACTCCAATTTACAGGATAGGAAAGGCATTTTCCTCCTTCTAGGTATTTTGAAGAATCCAACTGAAGAGAAGAGAAGCATTCAACAGAATACTAAAAGGCCATCCGTTTGTAACTATGGACCTCATGAAGTTGCTAGCAATACTTCCTTCACAATGACAATAAGAAGTCAATGTTACTTAAGGTGGTCCGTGAAACTGCCAAAGGGATCACTGCAGGGCTACATCAAACCGGGTCCACAAAAAGTAACGCTGCTGGTTGGGGACAAATCATGGACGGTGAAGTTGATTCATTACCCAAACATTCCAAGCAGTTCATTTTCTGCAGGATGGCCAATGTTCGCAAGGGAAAACAATTTAAAAGTACAAGATACTTGCTTCTTCGAGCTGCTAAATTATAGTAGTAAGGAAATGGTGATGAAGGTTTCCATTTTCAAAACGCTCCTTTGTTAA 837 0.4014 MTSKPINGDGFNGHTTSKPIHFFRIMHHETLSQGKLRIPEKFVRKYGESLSNTMFLKLPNGAEWKVDVEKHDDGRVWFQNGWKEFEEYYSLAHGHLLVFKFDGITSHFHVHIYDMSTMEIDYPLKKDEGNSNLQDRKGIFLLLGILKNPTEEKRSIQQNTKRPSVCNYGPHEVASNTSFTMTIRSQCYLRWSVKLPKGSLQGYIKPGPQKVTLLVGDKSWTVKLIHYPNIPSSSFSAGWPMFARENNLKVQDTCFFELLNYSSKEMVMKVSIFKTLLC. 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02599 278 PANTHER B3 DOMAIN-CONTAINING 14 262 - -
Seca1g02599 278 ProSiteProfiles B3 DNA-binding domain profile. 21 116 IPR003340 GO:0003677
Seca1g02599 278 SUPERFAMILY DNA-binding pseudobarrel domain 16 116 IPR015300 -
Seca1g02599 278 CDD B3_DNA 21 114 IPR003340 GO:0003677
Seca1g02599 278 CDD B3_DNA 195 274 IPR003340 GO:0003677
Seca1g02599 278 Gene3D - 164 276 IPR015300 -
Seca1g02599 278 Pfam B3 DNA binding domain 23 114 IPR003340 GO:0003677
Seca1g02599 278 Pfam B3 DNA binding domain 193 270 IPR003340 GO:0003677
Seca1g02599 278 SUPERFAMILY DNA-binding pseudobarrel domain 175 274 IPR015300 -
Seca1g02599 278 Gene3D - 14 117 IPR015300 -
Seca1g02599 278 SMART B3_2 22 116 IPR003340 GO:0003677
Seca1g02599 278 SMART B3_2 178 276 IPR003340 GO:0003677
Seca1g02599 278 ProSiteProfiles B3 DNA-binding domain profile. 178 276 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02599 Seca-Chr1 67694908 67696098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02599 175 275 B3 DNA Binding Superfamily AT3G18990 29.412 2.83e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca1g02599 B3 8e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02599 - - aprc:113849508 298.901