Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02591 ATGACTATAGCACACGAGGGGTCCAACCACAAATATGATGAGAAGGATCTTAAAGTTGGAAACTTTGATGAACTTGTTGAGCCAGATTCCTTTTCATACTTAAACAATGATGACCCAGTTTATATCCCACAAGACGCACTACAGGAGCTGGAATTCGACACTAGTTTTTGGGATTTTGAATTAGATGATTTCATAAAGTGTGACACTCCTTATAAAGAAAACATCAATTCAGGGGGAAAGAATGTGTCAAGTATCTATATCAATCACGGGTCTCTACCGGATCAAAGCAAGTCAACCGTTGTTAAGAAGCGGAGAACAAATATCCTCAGAGCAAAAAACATATTTATTGGATTATGGCCAAAATTTGATAGCTGTTTTCACAAGTCAGAGCAAAATCTAGATTTTAATAAGATACATAAAAGATGTAGTCATTGTGAGACCTATATAACCCCTCAGTGGAGGCCAGGTCCTTTGGGACGAAATACATTGTGCAATGCTTGTGGGATTCGATACAAGTTAGGGAAGTTGTTGCCAGAGTATAGACCCGTGTCAAGTCCAACTTTTGATGCTAGTAAGCATTCAAATTTTCATAAAATGATTATGAGAAAGAGAAGATAA 618 0.3738 MTIAHEGSNHKYDEKDLKVGNFDELVEPDSFSYLNNDDPVYIPQDALQELEFDTSFWDFELDDFIKCDTPYKENINSGGKNVSSIYINHGSLPDQSKSTVVKKRRTNILRAKNIFIGLWPKFDSCFHKSEQNLDFNKIHKRCSHCETYITPQWRPGPLGRNTLCNACGIRYKLGKLLPEYRPVSSPTFDASKHSNFHKMIMRKRR. 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02591 205 CDD ZnF_GATA 141 192 IPR000679 GO:0006355|GO:0043565
Seca1g02591 205 PANTHER GATA TRANSCRIPTION FACTOR 137 204 - -
Seca1g02591 205 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 137 195 - -
Seca1g02591 205 ProSiteProfiles GATA-type zinc finger domain profile. 136 173 IPR000679 GO:0006355|GO:0043565
Seca1g02591 205 FunFam GATA transcription factor 136 186 - -
Seca1g02591 205 SMART GATA_3 136 190 IPR000679 GO:0006355|GO:0043565
Seca1g02591 205 ProSitePatterns GATA-type zinc finger domain. 142 167 IPR000679 GO:0006355|GO:0043565
Seca1g02591 205 Pfam GATA zinc finger 142 175 IPR000679 GO:0006355|GO:0043565
Seca1g02591 205 Gene3D - 135 203 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02591 Seca-Chr1 67279106 67279723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02591 140 205 C2C2-Gata Transcription Factor Family AT4G32890 63.636 2.23e-27 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca1g02591 GATA 4.7e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02591 - - gmx:102662403 125.946