Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02588 ATGCTGACAAAGAATGTTGAAACCAAGAGAATGACTTCTTTTAGGAAAAGGCCTTCTTCCTATAGAGACTTCCTTTCTCTCTCTAAGCCAAGCATAGATAAAAACCAGGAGAAGAAGAGGAAGAATCCTCTTGACACTTTTTTGAGTCAAGGAGATCACGTGGCACGCGAGAGAGTGAGGATGACATTGAGGTTGTTCGATACTACTTGTAGAGACTATGCACAGAAAGGGGTTCCTAGAGTACTTGACAAAGCGGCTAAGGAACTTCAAGTTAAAGGAAAGTTCGTCAACCCTGGGAAACAAATTATAGGATTCATCCCTGGAGTTGAAGTCGGTGATGAATTCCTGTACTGGAGGGAGTTTAACGTTGTTGGCCTTCATCGCCAGATCACCCGTGGCATAGATTATGTGAATGTTAATGGCATGTTGCTCGCTACCAGCGTTGTTTCGGGAGGGATTTATGATGATGATGTGGAGGATACAAATGAGATAGTTTATATGGGGGAGGGAGGGAATGTGATAAAGAGAGAAAGGAAACCTAAAGATCAGAAACTTAAAAGGGGTAATCTTGCTTTGAAGAACAGTTTCGAGGTTAAGAATCCGATTAGGGTGATACTCAAGTCTGGGTCAAAGGATGAAGGTTCTGATGTGTATGCTTATTATGGACTTTATCAGGTTGATAAATATTGGCATGAGAAATGGTTACATGGTAAGTTGGTTTACAAGTTCAAATTGAAAAGAATGCCTCATCAAGGTTTGTGTGTCACTGACATTTCTTATGGGAAAGAGTTAATTCCTATATGTGCCATTAATACTGTGGATGATGAAGGGCCACCTGTGTTTGAATACATAACTCGCATGGTGTATCCTAATTGGTGCAACCCCATTCCTTATGTGGGGTGTGATTGTGTCGATGGATGCTCTGACTCGGAGATATGTTCTTGTGTAGAGAGGAATGGGGGTAAAATCCCATTAGTTAGCCAAAATGGGATTCAATTTCGGTTTGAAATATTTAAGACCAAGACAAAGGGATGGGGTGTGAGATCCCTTAATAGCATTCCTTCTGGAAGTTTTATATGTGAATATACAGGTGAGCTTATTGAACTTGAGGATGCTAAAAATAGGGCTAATAATGATGAGTATCTGTTTGATATTGGGAATAACTATAGTGATGATACTCTCTGGGAAGAGCTTTTGGCGACTATCCCTAACATAGGGTTGAGTTATTCTTCCCAAGTAATTGAGCATGGTAGCTTCACAATTGATGCTGCACACTATGGTAATTTTGGGAGGTTTATTAACCACAGTTGCTCCCCTAATCTTTTTGCTCAAAATGTCCTTTATGATCACGATGACAATAAGATTCCTCACATAATGTTGTTTGCGGCTAACAACATTCCTCGCATGCAAGAGTTGACTTACAATTACAATTACAAGATTGATCAAGTTTGTGGTGCTGATGGCAATATAAGGAAGAAGAATTGCTATTGTGGTGCTCTAGAGTGTACTGGCAGGATGTATTGA 1524 0.4016 MLTKNVETKRMTSFRKRPSSYRDFLSLSKPSIDKNQEKKRKNPLDTFLSQGDHVARERVRMTLRLFDTTCRDYAQKGVPRVLDKAAKELQVKGKFVNPGKQIIGFIPGVEVGDEFLYWREFNVVGLHRQITRGIDYVNVNGMLLATSVVSGGIYDDDVEDTNEIVYMGEGGNVIKRERKPKDQKLKRGNLALKNSFEVKNPIRVILKSGSKDEGSDVYAYYGLYQVDKYWHEKWLHGKLVYKFKLKRMPHQGLCVTDISYGKELIPICAINTVDDEGPPVFEYITRMVYPNWCNPIPYVGCDCVDGCSDSEICSCVERNGGKIPLVSQNGIQFRFEIFKTKTKGWGVRSLNSIPSGSFICEYTGELIELEDAKNRANNDEYLFDIGNNYSDDTLWEELLATIPNIGLSYSSQVIEHGSFTIDAAHYGNFGRFINHSCSPNLFAQNVLYDHDDNKIPHIMLFAANNIPRMQELTYNYNYKIDQVCGADGNIRKKNCYCGALECTGRMY. 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02588 507 SMART set_7 333 483 IPR001214 GO:0005515
Seca1g02588 507 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 6 499 - -
Seca1g02588 507 SMART preset_2 255 341 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca1g02588 507 Pfam Pre-SET motif 258 324 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca1g02588 507 Pfam SAD/SRA domain 103 251 IPR003105 -
Seca1g02588 507 ProSiteProfiles Post-SET domain profile. 491 507 IPR003616 -
Seca1g02588 507 ProSiteProfiles YDG domain profile. 104 247 IPR003105 -
Seca1g02588 507 Pfam SET domain 344 477 IPR001214 GO:0005515
Seca1g02588 507 Gene3D SET domain 253 507 IPR046341 -
Seca1g02588 507 Gene3D - 101 252 IPR036987 -
Seca1g02588 507 SMART G9a_1 99 251 IPR003105 -
Seca1g02588 507 SUPERFAMILY PUA domain-like 92 251 IPR015947 -
Seca1g02588 507 SUPERFAMILY SET domain 241 483 IPR046341 -
Seca1g02588 507 ProSiteProfiles SET domain profile. 333 477 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02588 Seca-Chr1 67096341 67098011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02588 91 507 EF-hand Containing Proteins AT5G13960 37.195 6.23e-94 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca1g02588 SAD_SRA 7.4e-41 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02588 K11420 - lang:109363359 605.52