Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02582 ATGATTGAAATCAATGACACTGATGATGATGATAGTGGCTCTCAAGAGAGGTTGGTGCATTCTGAGAAGAAGGGGTTTCAGGCTCTTGTTCATGTTAAGGAGGAAGAGAAGAGTGAGGAAGGTTATGTATTTGGGAATGATAAAGGTGAAAAATTTGGGAATGATGAGGGGTTGGAGCATTCTCAGGAGAAGGGGTTTGAGGGTTTTGTTGATGATAAAGAAGGAGAAAAGAGTGAGGAAGATAGAGGAAGTTATGCATTTGCTGATAAAGGTGAAAATTTTGGGAATGAGGACTGTGGTTGGGGACCTGCAAACCCAATCACAATAGATTCAGATAGAGGTTGTGACTCTGAGGAAGAACGTGGTTCAGCTGGTGATGATATTTGGTCTTCATCAACGGATAGTGAGTATGTTGAGACAAGTGATGAAGATTTTCTAATTGATGAAGACGAGAATGAAATTTTGAGCAGTGAAGAAAGTTCTAGCTCTTCTGATGATGAGAAGGAGAAAGAATGGAGGAGATATAGCAAGGAGAGGGTGAGAAAGGTGGAGACTGAAAGCAGTGGAATTTGCAGAAAAAGTGGTGAAAGGAAATATAAGCAAGTGGAGGAGGAGGAGGTGGAGCTTGAAAACACTCCATCCTCGCTTTCTCAAGAGGAGGATAATAAGGAAGCAAAGAAACATGAGGCAAAGAGAGTAGAAAGAAGGGTCAAAAATGTCAGCGATGACGTTGAAGGTTTTGGTGATTACCAGAAGAGTTTAGGTCGCTGTAGGCCTTCTGAAGATGAATCACAGGAGGAAAAGAAGAAACAAGCTAATGACTCTGTGAATCTTGATGGTTATAAAGGAAAAGGGCATCATGAAAAAGGTACTAGTGTGAGAAAAGTTTCTTCATTGCTAAGAAACCAAGAGAAGGTAGGAGATTCAGCTAAACATAAAACCATGGAGAACAAGGAAAGGGATCATAAGGATGAAACTGGTTACAGAAATGAGCTGCGTGAGAAGAAGCCATGGGTGGTGGATAATAAAACTGGTTATAGAGATGAGCTGCATAAGGTGCTAAGGATGTCATCAAAGCGGAAGGAGCAACGGTTAATTGAACTCCTTGCTGAATGCCTCTCAGGAATGTATAACTCTGTTAAAGGAGACTCATATGGGTTGGAAGAAAAGAATGATGATGTTTATCAGCTAGAAACTCAGCCACCAGCTTGTGGGGAGGCACAGCCATTACAGTGGAAGGAGCTTAGGGAGGTTCAACCACCACTGGAAAGAACAGAGTCTGAGAAGGAGTTGGATATGTTGTGGAAAGAAATGAATGAAGCGCTTGAATTTGAAGAAATTGCTTCCCGGGTGGGCAATATAGGGATAAATGAAGAAATACAAAACACAGGGAGTTCAACCTTTATCTGTGAACACGACTTTTATCTTGACGAGCAGATTGGGGTATATTGCAAATATTGTTATTATATTGCCACTGAGATCAAATATGTCTCACCACCCGTGGTAAGTATAGAAGGATTAAGGAAAACAGTGTCATCTGGTGGAGAAAAAGTTTCACTCTTTGAGATTAATAATTCTGGTAGTGACTCAGAGGCTACTTTCATTCATAATGAAGGCACAGCTTGGGACCTGATTCCTAATATCAAGGAAACCTTATATCCTCATCAACAAGAAGGTTTTGAGTTCATTTGGACAAATTTGACAGGATCTATTGACCTCCACAAGTCGAAGAGGGTTGATTCTTGTAGTGTGGGTGGATGCATCATTTCTCATGCTCCTGGAACTGGGAAGACTCGTTTAACCATGGTGTTTCTTCAGGCATACTTGAAAGTATTTCCAAAATGCCGACCAGTTATCATTGCTCCTGCTAGCCTATTGCTTACATGGGAAGATGAGTTCAAAAAATGGGACATAGGAATTCCATTCCACAACCTTAACAATCTTGAATTATCTGGAAAAGAGCACATTAATGCCACTAACATAGTTGATTGGTCTAGAAATCCACAGCTGAATAAGAATGGTGTGCGTATGGTGAAGTTTTGTTCATGGTTACAAGAGAAAAGCATCTTGGGAATTAGCTACCATATGTATGAGAAGCTTGCAGGAGGGAAATCCAAAGCTGACTTGGAAAACAAGAAAACCGGGAAGGGGAAAATAGAGAAGAAGCATGTGAGTGTGAAGGTGGAGAACACTAAAAGTGGTATGATGGGAAAGGCTCTGCGTGATGCTCCTGGTTTGTTAGTGCTAGATGAAGGGCACACACCAAGAAACCAGCGTAGTCTTATTTTTAAGGTTCTGTCTGAAATTCAAACAAAGAAGCGCATTATCCTTTCAGGAACTCCTTTCCAGAACAATTTTCTGGAACTGTATAACACTCTGTGCTTAGCAGTTCCATCATTTCCTGAGACAATACCACATGAACTGAAAAAGTTCTGCCAGAGTAGACTGATGCAAGAAAAGAAAGCACCTAAAGATGGCACTTGTGAAACGGATTGTTCTGGCAACATTACAGGGAATCCTGTTGATAAAATAATAAACCAGTTGAAATTGCTGATGGATCCTTTTGTTCATGTTCACAAAGGCAGCATTCTTCAAAAACATCTTCCTGGGTTGAGAGATTGTGTGCTGACTTTGAAGCCTGATAGTTTGCAAAATGGAATTCTAGAGAGCATTGAATGTTCTCAGAACACACTGAACTTTGATCACAAGTTAGCTTTGGTTTCTATCCATCCATCCCTTTTCCTCTGCTGCTCTTTGTCAGAGAAAGAAGAATGTGTTGTTGACAAGGATCTGTTGGAAAAACATAGATTGAATCCTTATGTAGGTGTCAAGACCAGATTCTTGGTAGAGTTTATCAGGCTGTGTGAGGCAGTGAATGAGAAAGTCCTTGTTTTTAGCCAATTCATTGATCCTTTGCGTTTAATTATAGACCAACTCAAGGCAGTTTTTAATTGGTATGAGGGGAAGGAAGTGTTTTGTATGTATGGCAAAGTTGATCAAAAGCAAAAGCAGTCCCTAATCCATCGCTTCAATGATGCAAATAGCCAAGTGAAGATATTGCTTGCATCAACAAAAGCATGTTCTGAGGGAATTAGCTTAGTTGGTGCTTCAAGGGTTGTGCTGTTGGATGTTGTGTGGAATCCCTCAGTGGAAAGGCAAGCTATTAGCAGAGCATATAGACTTGGCCAAAAGAGAGTTGTCTACACTTATCATCTCCTCACACAAGGAACCACTGAGTGTACAAAGTTTTGTAAGCAGGCAGAAAAGGACCGGTTATCTGAACTGGTTTTCTCTGCTAAAAATGCTGAAAATGATGAGCCAGAGAGTTGTGCAGGAAATTTTGAGGATAAAGTTCTTGATCAGATGGTCAGACATGACAAACTCAAAGACATGTTTGGTGAATGTTTGGTACAGCCAAAGGAAAGAAACATGTTTGAGAGTTTTGGCTCTTGA 3453 0.4063 MIEINDTDDDDSGSQERLVHSEKKGFQALVHVKEEEKSEEGYVFGNDKGEKFGNDEGLEHSQEKGFEGFVDDKEGEKSEEDRGSYAFADKGENFGNEDCGWGPANPITIDSDRGCDSEEERGSAGDDIWSSSTDSEYVETSDEDFLIDEDENEILSSEESSSSSDDEKEKEWRRYSKERVRKVETESSGICRKSGERKYKQVEEEEVELENTPSSLSQEEDNKEAKKHEAKRVERRVKNVSDDVEGFGDYQKSLGRCRPSEDESQEEKKKQANDSVNLDGYKGKGHHEKGTSVRKVSSLLRNQEKVGDSAKHKTMENKERDHKDETGYRNELREKKPWVVDNKTGYRDELHKVLRMSSKRKEQRLIELLAECLSGMYNSVKGDSYGLEEKNDDVYQLETQPPACGEAQPLQWKELREVQPPLERTESEKELDMLWKEMNEALEFEEIASRVGNIGINEEIQNTGSSTFICEHDFYLDEQIGVYCKYCYYIATEIKYVSPPVVSIEGLRKTVSSGGEKVSLFEINNSGSDSEATFIHNEGTAWDLIPNIKETLYPHQQEGFEFIWTNLTGSIDLHKSKRVDSCSVGGCIISHAPGTGKTRLTMVFLQAYLKVFPKCRPVIIAPASLLLTWEDEFKKWDIGIPFHNLNNLELSGKEHINATNIVDWSRNPQLNKNGVRMVKFCSWLQEKSILGISYHMYEKLAGGKSKADLENKKTGKGKIEKKHVSVKVENTKSGMMGKALRDAPGLLVLDEGHTPRNQRSLIFKVLSEIQTKKRIILSGTPFQNNFLELYNTLCLAVPSFPETIPHELKKFCQSRLMQEKKAPKDGTCETDCSGNITGNPVDKIINQLKLLMDPFVHVHKGSILQKHLPGLRDCVLTLKPDSLQNGILESIECSQNTLNFDHKLALVSIHPSLFLCCSLSEKEECVVDKDLLEKHRLNPYVGVKTRFLVEFIRLCEAVNEKVLVFSQFIDPLRLIIDQLKAVFNWYEGKEVFCMYGKVDQKQKQSLIHRFNDANSQVKILLASTKACSEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKRVVYTYHLLTQGTTECTKFCKQAEKDRLSELVFSAKNAENDEPESCAGNFEDKVLDQMVRHDKLKDMFGECLVQPKERNMFESFGS. 1151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02582 1150 MobiDBLite consensus disorder prediction 1 330 - -
Seca1g02582 1150 MobiDBLite consensus disorder prediction 305 330 - -
Seca1g02582 1150 MobiDBLite consensus disorder prediction 255 294 - -
Seca1g02582 1150 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 131 1143 IPR044567 GO:0080188
Seca1g02582 1150 Pfam Helicase conserved C-terminal domain 949 1062 IPR001650 -
Seca1g02582 1150 Gene3D - 871 1142 IPR027417 -
Seca1g02582 1150 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 950 1108 IPR001650 -
Seca1g02582 1150 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 578 799 IPR014001 -
Seca1g02582 1150 MobiDBLite consensus disorder prediction 217 245 - -
Seca1g02582 1150 MobiDBLite consensus disorder prediction 11 87 - -
Seca1g02582 1150 CDD SF2_C_SNF 919 1073 - -
Seca1g02582 1150 MobiDBLite consensus disorder prediction 137 156 - -
Seca1g02582 1150 MobiDBLite consensus disorder prediction 161 207 - -
Seca1g02582 1150 Pfam SNF2-related domain 562 885 IPR000330 GO:0005524|GO:0140658
Seca1g02582 1150 SMART ultradead3 548 807 IPR014001 -
Seca1g02582 1150 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 542 813 IPR027417 -
Seca1g02582 1150 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 744 1101 IPR027417 -
Seca1g02582 1150 Coils Coil 192 212 - -
Seca1g02582 1150 Gene3D - 528 831 IPR038718 -
Seca1g02582 1150 Coils Coil 216 243 - -
Seca1g02582 1150 SMART helicmild6 977 1062 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02582 Seca-Chr1 66786538 66790577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02582 960 1092 RAD5 or RAD16-like Gene Family AT5G43530 39.098 6.01e-16 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca1g02582 SNF2_N 1.8e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02582 K10875 - gmx:100812737 1085.86