Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02574 ATGCAACTCAATCACCTCTGCATTGTTTTACCACCAAATTCAGGTGAAATGGAGCAACTTCATAAAGGTGTGGAACAATCCTTTCAATCTTCAAAAAAACAAGTTAAGGCCAAACAGACTCACAGGGCTTGTGGGGGAAAAGTTCTTGCTTTGCTTCATGATTCATTGACCAAGTTATACAACTCAGGGTGGTGGACAATTTGCCAACATGAAGTGCACAAGGAAAAGAAGAACTCAAGTGTGTTTCATGACATGGATGGTGTTCAATTTGCTGTCAAGATTGGTAGGGACAATCCGAGGATTTTCAGCTATGCAGAGCTTTTCATAGGGTCTAATGGTTTTAGTGAAGATGAAATTCTTGGGAGTGGAGGGTTTGGCAAAGTGTACAAGGCTGTTTTGCCTAGTGATGGAACTTTGGTTGCTGTGAAATGCTGCTTAGCAGAGAAAGGGAAGCAATTTGAGAAGAGTTTTGCAGCAGAGTTAACAGCTGTGGCAGATCTTCGTCACAAGAACCTTGTGAGGCTTAGAGGTTGGTGTGTTCATGAAGATCAATTGCTTCTTGTTTATGACTACATGCCTAATCGTAGCCTCGACCGCATACTCTTCCGCAAGAATGAGAAATTGAAGGCTGAGCCTCTTGATTGGGGGCAAAGGTTGAAAATTGTGAAAGGTTTGGCAGCTGCATTGTATTATCTGCATGAACAGTTAGAAACTCAAATCATTCATAGGGATGTTAAGACAAGCAATGTAATGCTTGATTCCCATTTCAATGCTCGCTTGGGTGATTTTGGCATGGCAAGGTGGCTAGAACATGAGCTTCAGTATAAGAATAGGAAAACATCATGCAAAATTGATCATTTCAGATTGGGAGAGACAACAAGGATTGGTGGTACAATTGGCTATCTTCCCCCTGAAAGCTTGCAGAAACCAAGCAATGCTACCTCCAAATCTGATGTATTCAGCTTTGGCATAGTTGTGCTAGAGGTGGTATCTGGAAGGAGAGCAATAGATCTCACATACCCAGATGATCAAATCATTTTGCTTGATTGGATCAGAAGGCTTTCTGATGAAAGGAAGGTTCTAGAGGCAGCTGATACTAGGCTACAAGGTGGATCCTACAAGCTTTCTGAGATGCAGCATCTCATTCACATAGGCCTTCTCTGCACACTCCATGACCCACAATTGAGGCCAAGCATGAAATGGGTTGTGGAAGCAGTTTCTGACATTTGTTTCAAACTTCCACCACTCCCTTCATTTCTCTCACACCCTCTTTATATCTCTTTGTCTTCCCCATCTGAGACTAGTCCTAGCAGCACAAGTGGCAATAGCTCAGGTACAGAGAATGCTAGCATAATCACCAACTATACTTCATCAAACTATGTCACAGCTGCAGGGGAAACTGTATATGTAACTGCTGAACACAAAAACAGTGAAATCATCTCTTCTAGGAGCATCAATCACCAGCCACCATTTCCTGTGGTTGAAACTCCAAGGGAAATATCATACAAGGAGATTGTTTCAGCTACAGATAACTTCTCAGATTCAAGAAGGGTAGCAGAATTAGACTTTGGAACAGCTTATCATGGCATCCTTGATGATAGTTACCATGTTTTGGTTAAACGCCTGGGGATGAAGACATGCCCTGCATTGCGTGATAGATTCTCCAATGAACTCAGGAATCTAGGAAGACTTCGCCACAGGAATTTAGTGCAACTTCGTGGATGGTGCACAGAACAAGGAGAGATGCTTGTTGTTTATGATTACTCAGCTAGTAGAATTCTCAGCCAACAACTTCTCCATCATAATAATGGTAGAACTGGCTATTCTGTCCTCCAATGGCATCATAGGTACAATATAGTGAAAGCACTTGCTTCTGCAGTTCTCTATCTACATGAGGAATGGGATGAACAAGTGATCCACAGAAACATTACCTCTTCTGCTGTCATTCTTGAACCAGATATGAACCCAAGACTAAGCTGTTTTGCTCTGGCTGAATTTTTGTCAAGGAATGAGCATGGTCATCATGTAATCACTGACTCTAGAAAATCGGTTCGGGGAATTTTCGGTTACTTGTCACCGGAATATGTGGAATCTGGTGAAGCAACCACTGCTGCTGATGTCTATAGTTTTGGTGTGGTGGTGCTTGAAGTTGTCAGTGGACAGATGGCAGTGGATTTCAGGCAGCAGGAGGTGCTTTTGGTGAAGAAGGTTCATGAATTTGAGATGAGAAAAAGACCATTGGAGGAATTAGCTGATATAAGACTCAATGGAGAGTACAACTACAAAGAACTAATGAGGTTGGTAAAATTAGGAATTGCATGCACCCGTTGTAATCCACAATTAAGACCAAGCATGAGACAGATAGTGAGCATCCTTGATGGAAATGACAACTTACTAGAGCTGAAAAACAAGGAGAGCAGGGAAGAGTGGAAACAAAGAAATGCTAGTTCTTTGTCAATGATTAAGAGAATCCAAGCTCTAGGAATACAGTAA 2493 0.42 MQLNHLCIVLPPNSGEMEQLHKGVEQSFQSSKKQVKAKQTHRACGGKVLALLHDSLTKLYNSGWWTICQHEVHKEKKNSSVFHDMDGVQFAVKIGRDNPRIFSYAELFIGSNGFSEDEILGSGGFGKVYKAVLPSDGTLVAVKCCLAEKGKQFEKSFAAELTAVADLRHKNLVRLRGWCVHEDQLLLVYDYMPNRSLDRILFRKNEKLKAEPLDWGQRLKIVKGLAAALYYLHEQLETQIIHRDVKTSNVMLDSHFNARLGDFGMARWLEHELQYKNRKTSCKIDHFRLGETTRIGGTIGYLPPESLQKPSNATSKSDVFSFGIVVLEVVSGRRAIDLTYPDDQIILLDWIRRLSDERKVLEAADTRLQGGSYKLSEMQHLIHIGLLCTLHDPQLRPSMKWVVEAVSDICFKLPPLPSFLSHPLYISLSSPSETSPSSTSGNSSGTENASIITNYTSSNYVTAAGETVYVTAEHKNSEIISSRSINHQPPFPVVETPREISYKEIVSATDNFSDSRRVAELDFGTAYHGILDDSYHVLVKRLGMKTCPALRDRFSNELRNLGRLRHRNLVQLRGWCTEQGEMLVVYDYSASRILSQQLLHHNNGRTGYSVLQWHHRYNIVKALASAVLYLHEEWDEQVIHRNITSSAVILEPDMNPRLSCFALAEFLSRNEHGHHVITDSRKSVRGIFGYLSPEYVESGEATTAADVYSFGVVVLEVVSGQMAVDFRQQEVLLVKKVHEFEMRKRPLEELADIRLNGEYNYKELMRLVKLGIACTRCNPQLRPSMRQIVSILDGNDNLLELKNKESREEWKQRNASSLSMIKRIQALGIQ. 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02574 830 ProSiteProfiles Protein kinase domain profile. 512 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g02574 830 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Seca1g02574 830 FunFam Receptor like protein kinase S.2 472 588 - -
Seca1g02574 830 Pfam Protein tyrosine and serine/threonine kinase 518 791 IPR001245 GO:0004672|GO:0006468
Seca1g02574 830 Gene3D Phosphorylase Kinase; domain 1 87 191 - -
Seca1g02574 830 FunFam Receptor like protein kinase S.2 192 412 - -
Seca1g02574 830 PANTHER - 60 406 - -
Seca1g02574 830 Gene3D Transferase(Phosphotransferase) domain 1 595 820 - -
Seca1g02574 830 ProSiteProfiles Protein kinase domain profile. 114 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g02574 830 Pfam Protein kinase domain 115 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g02574 830 FunFam Receptor like protein kinase S.2 88 191 - -
Seca1g02574 830 SUPERFAMILY Protein kinase-like (PK-like) 98 439 IPR011009 -
Seca1g02574 830 ProSitePatterns Protein kinases ATP-binding region signature. 120 143 IPR017441 GO:0005524
Seca1g02574 830 Gene3D Transferase(Phosphotransferase) domain 1 192 410 - -
Seca1g02574 830 FunFam Receptor like protein kinase S.2 590 815 - -
Seca1g02574 830 SMART serkin_6 114 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g02574 830 Gene3D Phosphorylase Kinase; domain 1 472 588 - -
Seca1g02574 830 SUPERFAMILY Protein kinase-like (PK-like) 489 794 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02574 Seca-Chr1 66492891 66495383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02574 498 793 Receptor kinase-like Gene Family AT5G55830 36.789 9.62e-53 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Seca1g02574 Pkinase 3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02574 - - gmx:100796108 1368.6