Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02572 ATGTCCTTCAATCAATCAAAGTCCGATAAGAGCGACGCTGTGTACCGAAAATCCGGGCGATCCGCCAGCTTCAATCAGCAGCGAGGTTCATCCGGCGGTGCCTACGTCAAGGGCGGCGGCGCGGCCGTGCCTTCACCGTCACTCTCCTCTAGTCGGAGTTTTAACAAGAAGTCTAATAATAATGCACAAGGTGGGCAATCTAGGGTAAACCCTCCCCTGGTGAATTCAGCTGAGTCTAATAGTGCTCATGCAGTCCGGACCATACCAAATGGTTCCCATGTACAGCCGCACCATCATGGAGGATCTGATGCACCAGTTACAAATGCAGCTGTCAAGTCATCTGAATCATCAGCTGCACAGAGGAGCCCCAGAGTTGTTCCAAAAGCTCCTACTTCTCAACCTCCCGCCGTGAATTCTGAGCCAGCAGCTCCTACCACCCCTGCTAAGGGAGATGCATCTAAGGCATTCCCTTTTCAATTCGGATCTATTAGTCCCGGCTTTATGAATGTGATGGCAATTCCTGCTCGCACAAGCTCCGCTCCTCCTAATATAGATGAGCAGAAGCGTGATCAGGCTCGTCATGATTCTTTTAGACCTGTGCCTTCAGTGCCAGCACCTCCTGTTCCAAAGCATCAGCCAGCGAAGAAGGATACAGATCTATCTAGCGCTGGTGAAACTTATATAGGGACTAGGACAAAAAAGGATACTCAAGTTTCACCTTTACCCCCAGCAAGCCAGATGCAGAAGCCTTCTGTTATTCCTATAACTGGAATTTCTATGGCTATGCCATTTCACCAGTCACAGGCATCTGTACACTTTGGTGGTCCCAATCCACAGATTCAATCTCAGGGTATGTCAACAGCATCTCTTCAGATGCCTTTACCAATGCCTTTACCAATTGGAAGTGCTGCACAAGTACAGCAACAGGTTTTTGTTCCAAGTCTTCAACCTCATCCAATCCATCCTCAAGGAATTATGCATCAAGGCCAAAGCATTGGTTTCACTCCTCAAATGGGTCCTCAATTGCCCCATCAGTTAGGCAACATGGGTATTGGCATCAGCCCACAATATACCCCACAGCAAGGAGGAAAATTTGCTGGCCCTCGTAAAACTACTCCTGTCAAAATAACTCATCCTGAGACACATGAAGAGCTTAGGCTTGATAAAAGGGCTGATACATATTCAGATGGTGGATCATCTGGTGCTCGGTCTCATTCTGGCATGCCTTCTCAATCTCAGCCTGTCCAGCCATTTGCAGCTTCTCATCCTATTAATTACTATCCACCCAGTTCCTACAGTACAAGTTCTCTCTTTTATCCACCTCCTAGCTCTCTTCCATTATCAAGTAGCCAGATAACTACTAACTCTCAGCCTCCAAGAATTAATTATGCAGGGAGCCATGGTCTGCAAAATGTTGGTTTTATGAACACACAATCTCATACTCATAGTTCCCTGCCTGTTAATAAAGCTGGTACTCTTGTTCCTAGCAATGTTGAACCACCTAATCCAGAATTTTCCCGTGATGTGCAAAATGCAATCTCATTACCTCCATCAGGAGTAAATTCTGTGTCTATTAAGCCAAGTGGTGTGTCTGTTGTTGTGGACTCGAGCATTTCTGGTGCTCAAAAGAGTGGATCTCCTAGTTCTTCAGTAACATCTGGTGATGTTAGCTCTTCTGTGCCACCAAAAGGGTCTGAAACCTGTTCTGAAATTTCTTCACAACAATCTATTGCTGCATCTGCTGTCACTGAGGATTCTGTTTCAGTTGTGTCTAATAATGAAGGAAGAAAGAAAGAATCACTTAGTAGGTCAAATTCTTTGAAGGATAATCAGAAGAAACTACCAAAGAAAGGCCAATCTCAGCAACAGGTTACTGTACAATCTGCTGCTGTGGCTGAAGAACCTTCCCAAGTTGTTGATGGTGGTATCTCTGATAGAGGAGCTTCTGAAACCATAGGAACTAGAACAAACCATTCTGAAGCAATAGCCAGTAAAGATCTCTCAGCAGCAGCTTCAGATACATCAACTGCCAGTGAGGGCATACCTTATGCTGTTGAAGTGAAGACAAATGATTCTAGTGAGATTTCTGCTTGTGCTTCAGCTGAAGGACCTGTTACTCAAGCCGTGGATAGTTTGAACAATCATAAGAATGATGAACTGGATGGATTATCACAACAGGATAAACTGTTAAAGCAGAACATTTTGGATATAGGTGGTAAAAATGAAAATTCATCTCTTCAGAAATGTGAAAATATCACCCATGGTGAAATGGAATTTAAACAACCTAAACAAGGTGCTGCAAAGTTAAGCACTGAGGTTGTAACCTTGAGGACTGGACGGGAAGGGCAGGATGAATCTACAAGTTGTCTTGCAGAATGTGACAGGATGACGGATAATTTAGGCTTGTCTACCTCTACTGCATTGGATTCTAAAGATGTTTCTTTGAACAAAAATGATAGTGTTGTTGCTAACGAAGCTATTGCTACAAATTCTGGCATATCAGATCAGCAATCTGCTGATCTTCTAGAAACAACTTCAAAAAATTGCAAGGATAGTTCAGAGAATGCTGACAGTGATTTACTGTCTCTTCCAGCAGCATCAGGTACCAAGGACAGACCAATTTTAGAGCCAAGTAAGGTGAAAACTACAACAAAGGGGAAAAAGAAAAGAAAAGAGATTCTTCAGAAAGCAGATGCTGCTGGGTCGACATCTGATCTTTATAATGCATATAAGGGACCTGAGGAAAAGAAAGAAGCTGTTGTAAGTTCAGAGAAAACTGAAAGTGTTTCCACTTCCGGAAATTTGGAGCAGTTGCCTACGGATGCCGCTCAGCCAGATGATATTGCAAGTGAACAGAGTAAAGCTGAACTTGATGACTGGGAGGATGCTGCTGACATGTCTACACCAAAACTAGAAGTTCCAGATAAAAATGAACATGTTACTGATGGGAGTGCAGTTACTGCCAAAAAGTACTCTCGAGATTTCCTTTTGATGTTTGCAGACCAATGCACTGATCTTCCAGAAGGGTTTGAAATCAAAAAAGACATAGCTGAGGCTTTGATGAGTGCTAATATCAGTTCTCATGTTTCTGAACGAGATTCACATCCTTCTCCTGGAAGGGTTATAGATAGGTCAGGTCGGATGGATCGTCATGGGAGTGGTGTTATTGAGGAAGACAAATGGAGTAAAGTTTCTGGTGCTTTTCATTCTGGTATGCGTTTGGATGGTATTGGAGGTAATGCAGGATTTCGACCTGGCCAAGGAGGCAATTTTGGTGTTTTAAGGAATCCACGCACACAAACCCCTCTGCAATATGCTGGAGGGATTCTTTCTGGGCCAATGCAATCCATGGTAAATCAGGGAGGAATGCAAAGAAACAGCCCTGATAGTGAAAGGTGGCAGCGTGCTGCTAGCTTCCAGCAGCGGGGTTTAATTCCTTCTCCATCTCCCCAATCTCCTTTACAGATGATGCACAAAGCTGAGAAAAAGTATGAGGTGGGTAAAGTGACAGATGAGGAAGAGGCGAAGCAGAGGCAGCTGAAAGGTATATTGAACAAGTTAACTCCTCAGAATTTCGAGAAGCTTTTTGAGCAGGTAAAAGCAGTTAATATTGACAATGCAGTCACTCTCACTGGTGTCATCTCACAAATCTTTGAGAAGGCCTTGATGGAGCCTACCTTCTGTGAAATGTATGCCAATTTCTGTGCACATCTGGCAGCTGCGTTGCCTGATCTCAGTCAAGATAATGAAAAGATAACTTTTAAGAGATTATTATTGAACAAGTGCCAGGAAGAATTTGAGAGGGGTGAAAGAGAGCAAGAAGAAGCTAACAAGGCTGATGAAGGTGAGGTGAAACAGTCTGTTGAGGAAAGAGAAGAGAAACGAACCAAGGCTAGAAGGCGCATGTTGGGTAATATCAGATTGATTGGAGAACTATATAAAAAGAAAATGTTGACAGAGAGGATAATGCATGAGTGCATCAAGAAGTTACTTGGTCAGTATCAGGATCCTGATGAAGAGGATATTGAAGCCTTGTGCAAGCTGATGAGTACTATTGGAGAGATGATTGACCATCCTAAAGCCAAGGAACATATGGATGCATACTTTGAAAGGATGAAATTATTATCAAACAACATGAATTTATCTTCTAGGGTTAGGTTCATGTTGAAGGATGTCATTGATTTGAGAAAGAATAAATGGCAACAAAGGAGAAAAGTTGAAGGTCCAAAGAAAATTGAAGAGGTGCACAGAGATGCTTCCCAAGAGAGGCAGGCCCAAGCTAGTAGGCTGGGTCGTGGTCCAGGCAACAATGCAGCAAGGAGGATGCCTATGGAATTTGGTCCGAGAGGGTCATCTATGTTATCTCCTAATGCTCAGATGGGTGGAGTGCGTGGGTTGCCTACCCACGTTCGTGGGTTTGGTTCTCAGGATGTTCGTATGGATGAAAGGCAATCTTATGAGGCTAGGACATTGTCAGTTCCCTTGCCTCAAAGACCTTTAGGTGATGATTCAATAACATTGGGACCCCAGGGTGGTCTTGCTAGAGGAATGTCCATTAGAGGTCCACCTGCGGTTTCAAGTTCGACTGGTCTTAATGGTTATAGCAATTTAGTGGAGCGTGCTCCCTACAGTTCGAGGGAAGACCTCACACCAAGATATGTTCCAGATAAATTTTCTGGTCCAACTGCTTATGATCAATCCAGTTTTCAAGACCGCAATATGAATTATGGTCACAGGGACTTGAGAAATGCAGATAGAATTCCTGATAGAGCTGTTATAACCTCACCTCCTGCTCGAGTGCAAGGAACAGCAGGCTCCCAGAGCACTTCTTCAGAGATGGGTTGGTCAGAGGAGAGACTGCAGGACATGTCCATGGCAGCAATCAGAGAATACTATAGTGCTAGAGATGTGAATGAAGTTGTTTTATGTGTCAAAGATCTGAACTCACCAAGCTTTCATCCTTCCATGGTTTCTCTCTGGGTCACGGACTCATTCGAGAGAAAGGACACAGAGAGAGATCTTTTGGCCCAACTGCTAGTCAACCTTGTGAAATCTAATGATGGCACCTTAAATCAAGCCCAGCTCATCCAAGGGTTTGAATCTGTTCTCAGTACTTTGGAAGATGCGGTTAATGATGCCCCGAAAGCACCAGAGTTTCTTGGCCGCATTTTTGCCAAGACTATAACAGAGCATGTAGTCTCTTTGAAAGAGATCGGGCAGTTAATTTGTGATGGTGGGGAGGAACCAGGCAGTCTTTTAAACATTGGACTTGCAGCTGATGTTATTGGAAGCACCTTAGAAGTAATAAAAATTGAGAAGGGTGATGCTGTCTTGAATGAGATCCGGACAAGCTCCAACTTGCGGTTGGAGACCTTCCGGCCACCAGAACCGCTTACATCACGGAAGTTAGAGAAATTCATTTAG 5424 0.4388 MSFNQSKSDKSDAVYRKSGRSASFNQQRGSSGGAYVKGGGAAVPSPSLSSSRSFNKKSNNNAQGGQSRVNPPLVNSAESNSAHAVRTIPNGSHVQPHHHGGSDAPVTNAAVKSSESSAAQRSPRVVPKAPTSQPPAVNSEPAAPTTPAKGDASKAFPFQFGSISPGFMNVMAIPARTSSAPPNIDEQKRDQARHDSFRPVPSVPAPPVPKHQPAKKDTDLSSAGETYIGTRTKKDTQVSPLPPASQMQKPSVIPITGISMAMPFHQSQASVHFGGPNPQIQSQGMSTASLQMPLPMPLPIGSAAQVQQQVFVPSLQPHPIHPQGIMHQGQSIGFTPQMGPQLPHQLGNMGIGISPQYTPQQGGKFAGPRKTTPVKITHPETHEELRLDKRADTYSDGGSSGARSHSGMPSQSQPVQPFAASHPINYYPPSSYSTSSLFYPPPSSLPLSSSQITTNSQPPRINYAGSHGLQNVGFMNTQSHTHSSLPVNKAGTLVPSNVEPPNPEFSRDVQNAISLPPSGVNSVSIKPSGVSVVVDSSISGAQKSGSPSSSVTSGDVSSSVPPKGSETCSEISSQQSIAASAVTEDSVSVVSNNEGRKKESLSRSNSLKDNQKKLPKKGQSQQQVTVQSAAVAEEPSQVVDGGISDRGASETIGTRTNHSEAIASKDLSAAASDTSTASEGIPYAVEVKTNDSSEISACASAEGPVTQAVDSLNNHKNDELDGLSQQDKLLKQNILDIGGKNENSSLQKCENITHGEMEFKQPKQGAAKLSTEVVTLRTGREGQDESTSCLAECDRMTDNLGLSTSTALDSKDVSLNKNDSVVANEAIATNSGISDQQSADLLETTSKNCKDSSENADSDLLSLPAASGTKDRPILEPSKVKTTTKGKKKRKEILQKADAAGSTSDLYNAYKGPEEKKEAVVSSEKTESVSTSGNLEQLPTDAAQPDDIASEQSKAELDDWEDAADMSTPKLEVPDKNEHVTDGSAVTAKKYSRDFLLMFADQCTDLPEGFEIKKDIAEALMSANISSHVSERDSHPSPGRVIDRSGRMDRHGSGVIEEDKWSKVSGAFHSGMRLDGIGGNAGFRPGQGGNFGVLRNPRTQTPLQYAGGILSGPMQSMVNQGGMQRNSPDSERWQRAASFQQRGLIPSPSPQSPLQMMHKAEKKYEVGKVTDEEEAKQRQLKGILNKLTPQNFEKLFEQVKAVNIDNAVTLTGVISQIFEKALMEPTFCEMYANFCAHLAAALPDLSQDNEKITFKRLLLNKCQEEFERGEREQEEANKADEGEVKQSVEEREEKRTKARRRMLGNIRLIGELYKKKMLTERIMHECIKKLLGQYQDPDEEDIEALCKLMSTIGEMIDHPKAKEHMDAYFERMKLLSNNMNLSSRVRFMLKDVIDLRKNKWQQRRKVEGPKKIEEVHRDASQERQAQASRLGRGPGNNAARRMPMEFGPRGSSMLSPNAQMGGVRGLPTHVRGFGSQDVRMDERQSYEARTLSVPLPQRPLGDDSITLGPQGGLARGMSIRGPPAVSSSTGLNGYSNLVERAPYSSREDLTPRYVPDKFSGPTAYDQSSFQDRNMNYGHRDLRNADRIPDRAVITSPPARVQGTAGSQSTSSEMGWSEERLQDMSMAAIREYYSARDVNEVVLCVKDLNSPSFHPSMVSLWVTDSFERKDTERDLLAQLLVNLVKSNDGTLNQAQLIQGFESVLSTLEDAVNDAPKAPEFLGRIFAKTITEHVVSLKEIGQLICDGGEEPGSLLNIGLAADVIGSTLEVIKIEKGDAVLNEIRTSSNLRLETFRPPEPLTSRKLEKFI. 1808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02572 1807 MobiDBLite consensus disorder prediction 1548 1571 - -
Seca1g02572 1807 SUPERFAMILY ARM repeat 1614 1804 IPR016024 -
Seca1g02572 1807 MobiDBLite consensus disorder prediction 177 249 - -
Seca1g02572 1807 MobiDBLite consensus disorder prediction 924 939 - -
Seca1g02572 1807 FunFam Eukaryotic translation initiation factor 4G 1177 1412 - -
Seca1g02572 1807 Pfam MIF4G domain 1177 1399 IPR003890 GO:0003723|GO:0005515
Seca1g02572 1807 Gene3D - 1177 1412 - -
Seca1g02572 1807 MobiDBLite consensus disorder prediction 448 467 - -
Seca1g02572 1807 MobiDBLite consensus disorder prediction 1404 1441 - -
Seca1g02572 1807 MobiDBLite consensus disorder prediction 848 958 - -
Seca1g02572 1807 MobiDBLite consensus disorder prediction 649 677 - -
Seca1g02572 1807 MobiDBLite consensus disorder prediction 474 491 - -
Seca1g02572 1807 MobiDBLite consensus disorder prediction 107 121 - -
Seca1g02572 1807 MobiDBLite consensus disorder prediction 223 249 - -
Seca1g02572 1807 ProSiteProfiles MI domain profile. 1619 1743 IPR003891 -
Seca1g02572 1807 MobiDBLite consensus disorder prediction 539 677 - -
Seca1g02572 1807 MobiDBLite consensus disorder prediction 616 632 - -
Seca1g02572 1807 MobiDBLite consensus disorder prediction 596 615 - -
Seca1g02572 1807 Gene3D - 1612 1807 - -
Seca1g02572 1807 MobiDBLite consensus disorder prediction 1 160 - -
Seca1g02572 1807 MobiDBLite consensus disorder prediction 18 32 - -
Seca1g02572 1807 Pfam MA3 domain 1626 1732 IPR003891 -
Seca1g02572 1807 MobiDBLite consensus disorder prediction 397 419 - -
Seca1g02572 1807 MobiDBLite consensus disorder prediction 1027 1052 - -
Seca1g02572 1807 MobiDBLite consensus disorder prediction 375 393 - -
Seca1g02572 1807 MobiDBLite consensus disorder prediction 1033 1052 - -
Seca1g02572 1807 SMART if4_15 1177 1399 IPR003890 GO:0003723|GO:0005515
Seca1g02572 1807 MobiDBLite consensus disorder prediction 848 862 - -
Seca1g02572 1807 MobiDBLite consensus disorder prediction 474 513 - -
Seca1g02572 1807 MobiDBLite consensus disorder prediction 539 595 - -
Seca1g02572 1807 FunFam Eukaryotic translation initiation factor 4G 1613 1806 - -
Seca1g02572 1807 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 783 1807 IPR045208 GO:0003743
Seca1g02572 1807 MobiDBLite consensus disorder prediction 44 88 - -
Seca1g02572 1807 MobiDBLite consensus disorder prediction 1404 1423 - -
Seca1g02572 1807 SUPERFAMILY ARM repeat 1171 1401 IPR016024 -
Seca1g02572 1807 MobiDBLite consensus disorder prediction 1268 1296 - -
Seca1g02572 1807 MobiDBLite consensus disorder prediction 360 422 - -
Seca1g02572 1807 Coils Coil 1259 1279 - -
Seca1g02572 1807 SMART ma3_7 1620 1734 IPR003891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02572 Seca-Chr1 66418978 66428313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02572 1 1806 Eukaryotic Initiation Factors Gene Family AT3G60240 44.831 0.0 1273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02572 K03260 - gmx:100796636 2690.6