Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca1g02565 | ATGAACGAAGCAGATGTCTCCAAGCAAATCCAACAGATGGTGAGGTTTATCTGCCAGGAAACCAAGGAGAAAGCCAACGAGATCTTTGTCTCCGTTGAAGAAGAATTCAAGATCAAGAAGTTACAGTTTGTTGAAGCTAACAACAAAAAGATTCTACAAGAGTACGTGCGCAAAGAGAAGCAAGTTGAAATTCAGAAGAAGATTGAGTACTCTATGCAGTTGAATGCTTCTCGGATAAAATTTCTTCAAGCTCACGATGATGCGGTGAATAAAATGAAAGAAGCTGCATCTGAACCTCGCAATATGGGTTATATGGTTCGACTTGGTCTTTGGGGAGCTGGGCTTCTTTCTCTGATTACCGTGAATTTGTACAGATCATTGTTGACAACAAAGTCCATTTTCCACCTGCCCTCAGCCATCATAATTTCTATGATATCTGCTTTGGGACTCTTAATGATGAAATGCCTCTAA | 471 | 0.4034 | MNEADVSKQIQQMVRFICQETKEKANEIFVSVEEEFKIKKLQFVEANNKKILQEYVRKEKQVEIQKKIEYSMQLNASRIKFLQAHDDAVNKMKEAASEPRNMGYMVRLGLWGAGLLSLITVNLYRSLLTTKSIFHLPSAIIISMISALGLLMMKCL. | 157 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca1g02565 | 156 | Gene3D | - | 1 | 62 | - | - | |
| Seca1g02565 | 156 | PANTHER | ATPASE H+-TRANSPORTING V1 SUBUNIT E1A-RELATED | 1 | 98 | IPR002842 | GO:0033178|GO:0046961|GO:1902600 | |
| Seca1g02565 | 156 | Pfam | ATP synthase (E/31 kDa) subunit | 16 | 98 | IPR002842 | GO:0033178|GO:0046961|GO:1902600 | |
| Seca1g02565 | 156 | Coils | Coil | 41 | 61 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca1g02565 | Seca-Chr1 | 66328762 | 66329232 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca1g02565 | 1 | 97 | Primary Pumps ATPases(2) | AT4G11150 | 70.103 | 4.54e-41 | 135 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca1g02565 | K02150 | - | jre:109020393 | 144.436 |