Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02547 ATGTATTATATACTTAAATTGATTTATATTTCCTCACTTCTTTATCTATGTTTCCATACTTTCACATTATACATCATCCTCAACAAGTTTGCTCTTTTGCTATTACAAATTACAATATTGGCAATGGCTTGCAACATCAGTTCATCATCATCTAAGATGATAAGGAAATATGATGTGTTTGTGAGTTTTAGAGGTAAGGATACACGCTATAACTTCACCGATCATCTTTTTGGAGCTCTTCAAAGAAAAGGCATCATTTCATTCAGGGATGATACAAAACTCAAGAAAGGTGAATCCATAGCACCTGAGTTATTACAATCAATTGAAGGGTCTCAAATTTTTATTGTGGTCTTTTCAAAGAACTATGCTTCCTCAACATGGTGCTTGCGTGAATTGGAAAAGATGCTTGATTGTGTTCAAGTATTAGGAAGACACATTCTACCTGTATTCTATGATGTTGATCCATCTGAGGTGCGAAAACAAAGTGGGAGTTATGAGAAAGCCTTTTCTGAACATGAAGAAAGATTTAAACAAGATTTGGATACGGTGAAAAGATGGAGGGCAGCTCTAACACAAGCGGCTAATCTTGCTGGTTGGGATATACGTGATAAGCCACAATATGCTGAGATTGAAAAGATTGTTGAAGAGGTAATTCGTATATTAGATCACAATTTTTCAACTCCTCCAAGTGATGTAATCGGGATGCATTCTCCTATAGAAGAATTAGAAAAGGTTTTACTTTTGGACTCAGTTGATGATGTTCGGATTGTAGGAATTTGTGGGATGGGTGGAATAGGGAAGACCACTCTTGCTACTACTTTATATGACAAAATCTCTAATCAATATGATGCTTGCTGTTTTATTGATAACGTGAGCAAACTATATAGAGATTATGGTCCAATTGGTGCAAAAAAACAAATTCTACTTCAAACTTTAAATGAAGAAAATCTTCAAATATGCAATCTCTATAATGCAACTAATACATTACAAAGAAGGCTACATCGTGTAAAGGCTCTTGTAGTTCTTGATAATGTTGATCAAGTTAAAGATCTACAGAACTTGGTTGCAAATCGTGAATGGTTTGGTGCAGGGAGTAGAATCATCATAATTTGTAGAGATGAGCATATTTTGAAAGAGTATGGAGTGGATGCAATTTTTAAAGTTCCACTCATGGATTTCGATGATGCTGAGCAATTGTTTTGTAGAAAAGCTTTCAAATGTGATGATATTATGAGAGATTATGAAGAGGTAGCATCTAGCATACTAAATTATGCTAATCGCCTACCACTAGCAATTAAAGTGTTGGGCTCATTTTTGTTTGATCGAAATGTCTCTGAGTGGAAAAGTGCATTGGCTAGATTGAAAGAAAACTCGAGCAAAGATATCATGGATGTGCTACAATTAAGTTTTGATGGACTAGAGGAAATGGAAAAGGAAATATTTCTAGATATTGCTTGTTTCTTTAATTGGCATGAGGAGAATTATGTTAAGAAAGTTCTAGATTGTTGTGGATTACATCCTGATATTGGAATAAGAGTTCTCATTGATAAATCACTTATAAGCATTTCTTATGGTTTGGGCAATTCAGATAGTATGATTGTCATGCATGATTTGTTGCAAGAGTTTGGTAGAAAAATGGTTCATGAGAATTCAACCAAGGAGCCCAGAAAGTGGAGCAGGTTGTGGCTACAAAAATATTTCTACAATGTTAGATTGGAGAATATGGAAGAGAACGTTGAAGCCGTAGTTCTCAAGGATCCATATGAAACAGAAAAATTAATGGCTGAAGTCTTGTCAAAAATGAGTCATCTTAGATTACTCATACTTCATGAAGTGAAATTTTCAGGAAGTCTTGATTGTCTTTCTAATAAATTAAAATATGTTGATTGGCATGAATACCCTTTCATGTATCTGCCATCAAGTTTTCAGCCCAATCAACTTGTTGAATTGATTTTGAAGGATAGCAATATCAAACAACTATGGGAAGGCAAAAAGCATTTGCCTAGTTTGAGAACTATAGACCTTAGCCACTCCAAATATCTAATCAAGATGCCAGATCTTGGAGACGCCCCAAATCTTGAGTGGCTAAATCTTGAAGGGTGTATAAAACTTGTGCACATTGATGGATCCATTGGTCTTCTACAAAAGCTTATTTTCTTGAATTTGAAAGATTGCACAAATTTAGCAAGTATACCCAACAACATATTGGGTCTTAGTAATCTTGAATATCTAAATCTCTTAGGTTGTTCAAAAGTGTTTAACAAGCAGCTATTAGACAAAGCAGAGCATGCAGAGCATTTGAAGAAGCTTGATATGAGTGAAGCTACATTACATTCCCAATCAACTTCCTCAATCTTGAAATGGATTATGTTGCCTTTCAATTTCTTGTATACTAGAGGGCACAAAGATTCAACTACTTGTTTGTTGCCTTCCTTGCCTAACTTCTCTTGTTTGCGAGAACTTGATATCAGTTTTTGCGGTCTAAGCCAAATCCCTAATGCTATTGGATGTATACTTTGTTTAGAGAGATTAAATTTAGGAGGAAACAATTTTGTCACACTACATTGTAGCTTCAAGGAGCTCTCTAAACTTGTGTATTTGAACTTGGAGCATTGCAAGCATTTGAAGTCTTTGCCTGAGCTTCCTTCACGTACTTGCTTGCCAGTGGGAGGAGAATTTCTTATTGGTAAGAAACCACCAGGATCTTATATTTTCAACTGCCCGAAATTGTGTGAGAGGGATTGCAGCAGCATGAGTTTCCCATGGATGATACAACTCCTTCAGGTGAACAATGATTTCCCTTCCTCTATTGATAGAGTTAATGTTGTCGTTCCTGGAAATGAAATACCAAAGTGGTTCAACATTCAAAGTGTGGGTAGTTCCATGAGGATAGATCCATCTCCCATTATGGAAGACAATAGTTGGATTGGTGTTGCTTGCTGTGCAGTATTTATGGCACTTGATGACCCAACTACTTGGACAAATGAATGCGAACCAGAACCAGAACCAGATATACTGATTGGTTTTCAAAATAAAGGGGTTGGGCGTTATGTTGGTATTCCAATAATTCTCAATAGAGATCTTATCACAGTGAAATCAAATCACTTGTGGCTAATCTATTTCACTCGGGAAACGTTCTTTGATTTTGTGCGCAATAAAGACAGAATACTCAAGAAGGATGTTGATGATATCAAAATGGAAGTTCTATCCAATGATGCCAAAGGCTTGCGTTTGGAGGTGAAGAATTGGGGGTATCGTTGGGTATATAAACAGGATCTTGAACTATTGAACCAAAATGGAAATTCGTTTGCTCGGAAGCGCAAGTTTTTGGAAATTGAAAATGAGGCACAAGCACAAGCACAATCATAA 3369 0.3609 MYYILKLIYISSLLYLCFHTFTLYIILNKFALLLLQITILAMACNISSSSSKMIRKYDVFVSFRGKDTRYNFTDHLFGALQRKGIISFRDDTKLKKGESIAPELLQSIEGSQIFIVVFSKNYASSTWCLRELEKMLDCVQVLGRHILPVFYDVDPSEVRKQSGSYEKAFSEHEERFKQDLDTVKRWRAALTQAANLAGWDIRDKPQYAEIEKIVEEVIRILDHNFSTPPSDVIGMHSPIEELEKVLLLDSVDDVRIVGICGMGGIGKTTLATTLYDKISNQYDACCFIDNVSKLYRDYGPIGAKKQILLQTLNEENLQICNLYNATNTLQRRLHRVKALVVLDNVDQVKDLQNLVANREWFGAGSRIIIICRDEHILKEYGVDAIFKVPLMDFDDAEQLFCRKAFKCDDIMRDYEEVASSILNYANRLPLAIKVLGSFLFDRNVSEWKSALARLKENSSKDIMDVLQLSFDGLEEMEKEIFLDIACFFNWHEENYVKKVLDCCGLHPDIGIRVLIDKSLISISYGLGNSDSMIVMHDLLQEFGRKMVHENSTKEPRKWSRLWLQKYFYNVRLENMEENVEAVVLKDPYETEKLMAEVLSKMSHLRLLILHEVKFSGSLDCLSNKLKYVDWHEYPFMYLPSSFQPNQLVELILKDSNIKQLWEGKKHLPSLRTIDLSHSKYLIKMPDLGDAPNLEWLNLEGCIKLVHIDGSIGLLQKLIFLNLKDCTNLASIPNNILGLSNLEYLNLLGCSKVFNKQLLDKAEHAEHLKKLDMSEATLHSQSTSSILKWIMLPFNFLYTRGHKDSTTCLLPSLPNFSCLRELDISFCGLSQIPNAIGCILCLERLNLGGNNFVTLHCSFKELSKLVYLNLEHCKHLKSLPELPSRTCLPVGGEFLIGKKPPGSYIFNCPKLCERDCSSMSFPWMIQLLQVNNDFPSSIDRVNVVVPGNEIPKWFNIQSVGSSMRIDPSPIMEDNSWIGVACCAVFMALDDPTTWTNECEPEPEPDILIGFQNKGVGRYVGIPIILNRDLITVKSNHLWLIYFTRETFFDFVRNKDRILKKDVDDIKMEVLSNDAKGLRLEVKNWGYRWVYKQDLELLNQNGNSFARKRKFLEIENEAQAQAQS. 1123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02547 1122 SUPERFAMILY L domain-like 535 933 - -
Seca1g02547 1122 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 752 IPR044974 GO:0006952
Seca1g02547 1122 Pfam NB-ARC domain 240 469 IPR002182 GO:0043531
Seca1g02547 1122 Gene3D - 222 385 IPR027417 -
Seca1g02547 1122 Pfam C-JID domain 944 1094 IPR045344 -
Seca1g02547 1122 SUPERFAMILY Toll/Interleukin receptor TIR domain 47 199 IPR035897 -
Seca1g02547 1122 Gene3D - 391 474 IPR042197 -
Seca1g02547 1122 Gene3D - 52 221 IPR035897 -
Seca1g02547 1122 Gene3D Ribonuclease Inhibitor 589 757 IPR032675 -
Seca1g02547 1122 Gene3D Ribonuclease Inhibitor 758 939 IPR032675 -
Seca1g02547 1122 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 221 484 IPR027417 -
Seca1g02547 1122 FunFam Disease resistance protein (TIR-NBS-LRR class) 53 223 - -
Seca1g02547 1122 ProSiteProfiles TIR domain profile. 55 221 IPR000157 GO:0007165
Seca1g02547 1122 PRINTS Disease resistance protein signature 425 439 - -
Seca1g02547 1122 PRINTS Disease resistance protein signature 332 346 - -
Seca1g02547 1122 PRINTS Disease resistance protein signature 665 681 - -
Seca1g02547 1122 PRINTS Disease resistance protein signature 256 271 - -
Seca1g02547 1122 SMART till_3 56 196 IPR000157 GO:0007165
Seca1g02547 1122 Pfam TIR domain 56 217 IPR000157 GO:0007165
Seca1g02547 1122 Pfam Leucine Rich Repeat 646 665 IPR011713 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02547 Seca-Chr1 65772133 65778165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02547 55 844 WRKY Transcription Factor Family AT4G12020 30.519 5.77e-90 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02547 - - gmx:100820213 1272.69