Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02539 ATGGCTAGAACAGTTCCTCAAGAACCTCATGTGAAGCCAACCCACTTTTTCAAGATCATACGTGGTCACAGCCTTCATAAAGGAAAGCTAATGATCCCAAAAACATTTGTGGAGAAATATGGAGAAGGCTTACCAAAATCTATATCTCTTGAGCCTCCAAATGGTGCAGAATGGAAATTAAATTTGGTAAAACGTGATGGTAAAATATGGTTTGGAAAGGGTTGGAAAGAATTTGCAGAGTATCATTCTCTAGCTCCTGGGCATCTTCTGGTTTTCAGATACGAAAGAACTTCCCATTTTCAGGTACACATATTTGATATGAGTGCCTTAGAGATAAACTACCCTTTCAAAAGAGCTGAAGGCAAAAGGGTCTCAAATGGTCAAGGAAATAAACCTTCAAAGAATGAAAATTCGGATGATTACAGAGCAGGTCATAAGAGAAAAGCAAACTTGTCATTAGAATTTCTTCAACCAAGTAAAATGGGAAGCTGTAAACATGTTAAAGATGGAAAGACCTTAAAATTGAAAAAGGAGGCTTTGCATCATACAGACAAAAAGTGCAAAGGAAGTTTTGATTTTTCAGGAAAACAAATTATTACTGCTGGGCAAGTTACTGCTCTTGACAGAGCAAGCTCTTTCAAAACTAATAATCCATCCTTCCTGGTTTGCATGAATCCATCATATATCGATGGTCGTTGTTATCTGAATTTACCATCTAAGTTTGGTAAGAGACACTTTGATTTGAGCAAGAAGTGGGGAGATATCCATCTTCGCGTGTTAAATGGGAGAGTTTGGCCTGCAAGGTACTTAATCAGGCAAGTCCAAACAAGAACAAGATTTGAACTAAAGGGATGGAAGGCATTTTCCAAGGACAATAACTTGAAAGCAGGTGATGTTTGCACCTTTGAGCTCATTCTTGGGACTAAACTCACCTTCCTGGTTCACATCTTCAGAAATGCAGGCAATTCAAATTGTCCAACATCTCAAGAATCTCTTCAAATTAGAGAAGCTTGTCAAGGAGACAGAAAGGAAATGAGAATCATCACCACAACTACCAAATTACCACCACCAAAGAGTTTCAATTCTATCATTTGA 1095 0.3808 MARTVPQEPHVKPTHFFKIIRGHSLHKGKLMIPKTFVEKYGEGLPKSISLEPPNGAEWKLNLVKRDGKIWFGKGWKEFAEYHSLAPGHLLVFRYERTSHFQVHIFDMSALEINYPFKRAEGKRVSNGQGNKPSKNENSDDYRAGHKRKANLSLEFLQPSKMGSCKHVKDGKTLKLKKEALHHTDKKCKGSFDFSGKQIITAGQVTALDRASSFKTNNPSFLVCMNPSYIDGRCYLNLPSKFGKRHFDLSKKWGDIHLRVLNGRVWPARYLIRQVQTRTRFELKGWKAFSKDNNLKAGDVCTFELILGTKLTFLVHIFRNAGNSNCPTSQESLQIREACQGDRKEMRIITTTTKLPPPKSFNSII. 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02539 364 ProSiteProfiles B3 DNA-binding domain profile. 220 320 IPR003340 GO:0003677
Seca1g02539 364 SUPERFAMILY DNA-binding pseudobarrel domain 11 108 IPR015300 -
Seca1g02539 364 SMART B3_2 220 320 IPR003340 GO:0003677
Seca1g02539 364 SMART B3_2 16 108 IPR003340 GO:0003677
Seca1g02539 364 SUPERFAMILY DNA-binding pseudobarrel domain 213 319 IPR015300 -
Seca1g02539 364 Gene3D - 9 109 IPR015300 -
Seca1g02539 364 ProSiteProfiles B3 DNA-binding domain profile. 15 108 IPR003340 GO:0003677
Seca1g02539 364 Gene3D - 198 321 IPR015300 -
Seca1g02539 364 Pfam B3 DNA binding domain 220 319 IPR003340 GO:0003677
Seca1g02539 364 Pfam B3 DNA binding domain 16 106 IPR003340 GO:0003677
Seca1g02539 364 CDD B3_DNA 15 106 IPR003340 GO:0003677
Seca1g02539 364 CDD B3_DNA 218 318 IPR003340 GO:0003677
Seca1g02539 364 PANTHER B3 DOMAIN-CONTAINING 10 315 - -
Seca1g02539 364 MobiDBLite consensus disorder prediction 121 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02539 Seca-Chr1 65439620 65443079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02539 16 318 B3 DNA Binding Superfamily AT3G18990 31.657 1.41e-38 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca1g02539 B3 2.6e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02539 - - gmx:100819782 396.356