Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02537 ATGAAGCTTTATCTGAGAAGCAGAGGAAAGAAGAGCTCATTGATCATATACAAAGGTGTTCGATATAGGAAATGGGGGAAATGGGCTTCTGAGATTCGTGACCCTTTTAAAGGGGTCAGAATATGGCTTGGTACATATGATACCGAACTTGAGGCTGCTATTGCTTATAGCAAAAAGAAAAAAGAGTTTGAGGACAAATTACAAGAACAGAACACAAATAATCCTAATTTGAAGGATAGCAAACAAGGTTTGATTTTATTTGATAATTCATTCATCGATCTCTCAATAAATATATATATATATACACACACTAATGGTGGAGAAGAAATTAATTAA 336 0.3363 MKLYLRSRGKKSSLIIYKGVRYRKWGKWASEIRDPFKGVRIWLGTYDTELEAAIAYSKKKKEFEDKLQEQNTNNPNLKDSKQGLILFDNSFIDLSINIYIYTHTNGGEEIN. 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02537 111 Pfam AP2 domain 17 62 IPR001471 GO:0003700|GO:0006355
Seca1g02537 111 Gene3D AP2/ERF domain 16 76 IPR036955 GO:0003700|GO:0006355
Seca1g02537 111 SUPERFAMILY DNA-binding domain 16 67 IPR016177 GO:0003677
Seca1g02537 111 SMART rav1_2 16 81 IPR001471 GO:0003700|GO:0006355
Seca1g02537 111 Coils Coil 53 80 - -
Seca1g02537 111 ProSiteProfiles AP2/ERF domain profile. 16 75 IPR001471 GO:0003700|GO:0006355
Seca1g02537 111 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Seca1g02537 111 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Seca1g02537 111 PANTHER DNA-BINDING DOMAIN 13 66 IPR044808 GO:0003700|GO:0009873
Seca1g02537 111 CDD AP2 16 56 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02537 Seca-Chr1 65379452 65379787 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02537 17 63 AP2-EREBP Transcription Factor Family AT2G33710 65.957 2.46e-18 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca1g02537 AP2 2.3e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02537 - - aprc:113866790 91.2781